Detailed information on CNT30110100


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003779, E-value = 1e-25

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30575911Oryza longistaminataOryza barthii11.3732.4689.45199forward

Expression of CNT30110100

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MHKVFIIIVRKFAYFSFGRCISLIFGTKIIR*

>peptide 2 (31 aa)
MISVMPRNLDSLTCLMLNILIHGVMAITRFS*

>peptide 3 (77 aa)
VFVCSFFLATWLFCTFASRCSSPEAVRLLLCMQGSGFCWDGAGALAPTSPNSESAPVGSSSQGCTCSRLLKFKGKQN*

>peptide 4 (76 aa)
MEPLGNELTALWSVHDFPAYAILTGWSKSTMCIRGSKSDWTVAPTNKNRKYRDVMADLETKANSVLHPCHETWFEK*

>peptide 5 (51 aa)
LCLLLLPCDLVVLHFCFTLLLSRSCAAAALHAGQWVLLGWSWGSSPNKPQQ*

>peptide 6 (48 aa)
MNSLLCGQSTTSLLMLYSLDGASLPCALEAPKVIGLLLQLIRTENIAM*

>peptide 7 (44 aa)
SLFAPSSLRPGCSALLLHAAPLPKLCGCCSACRAVGSAGMELGL*

>peptide 8 (34 aa)
MNNLLTSCNNQYRISDWFRLGETYLLCVFLDSMV*

>peptide 9 (29 aa)
MMEGCDWLGRECWWRSRYILGQILRAKSCY

Sequence

>CNT30110100
GTCTTTGTTTGCTCCTTCTTCCTTGCGACCTGGTTGTTCTGCACTTTTGCTTCACGCTGCTCCTCTCCCGAAGCTGTGCGGCTGCTGCTCTGCATGCAGG
GCAGTGGGTTCTGCTGGGATGGAGCTGGGGCTCTAGCCCCAACAAGCCCCAACAGTGAATCCGCCCCTGTCGGTTCCTCTAGCCAAGGCTGCACTTGTTC
AAGGCTGCTCAAGTTCAAGGGGAAGCAGAATTGAGCTTCTAGGCCGTGAGTAAATTTTCAGCTTCATGTGAAGCATGATTGTTTGTTCTTATGGTATGAT
ACACCATCATGTTGGTGCACATGTGGTGAAAGGATCTCATCCCAGATAATTTAATTTGTTTGATCACAGGTCGTGCTGAACTCATCCATGGTGCTGACAA
CTTATTGCCTGCCATCATCTCATTGTTAATAAGACATCCTAGTCCTAATGGAACCGTTAGGCAATGAACTCACTGCTCTGTGGTCAGTCCACGACTTCCC
TGCTTATGCTATACTCACTGGATGGAGCAAGTCTACCATGTGCATTAGAGGCTCCAAAAGTGATTGGACTGTTGCTCCAACTAATAAGAACAGAAAATAT
CGCGATGTGATGGCTGATTTGGAAACTAAGGCGAATTCTGTTCTACATCCATGTCATGAAACCTGGTTTGAAAAATGACCTTGCACTTGTAGTAGTTCAG
CAACCAGTAGGAAAAGGGCCCTAAAATGCTTTGATGATGACCACAGCCGTGTGACCAAACGTATCAAAGAATCATGTGAGTTACCGGATAAGTTACTTGA
GAAAATAAAAGCTCAAGACGAGGTAATATATCTTGGTATTGTTATGAATAGATATGTAAATGCATAAAGTGTTTATTATAATTGTTAGAAAATTTGCTTA
CTTTTCTTTTGGTAGGTGTATTTCGCTGATATTTGGCACAAAGATCATAAGATGATAAGTGTGATGCCAAGGAATCTTGATTCTCTTACTTGCCTCATGT
TGAACATTTTAATACATGGTGTCATGGCCATAACACGATTCTCTTAGTTTAACCTATGGTTAAGGTGAACCATATAACCGCTATTGCCATCAACATATGT
TAATCATGTGCGAAAATTTGTGGTTGCAATGAATAATTTGTTGACATCATGTAATAATCAGTACCGAATTAGTGATTGGTTTAGATTAGGTGAAACTTAT
CTTTTATGTGTATTCTTAGATTCAATGGTATAAAAGTAGTAGAACTTTGAACTTAGTTAGTCATGACATGAATCTTACTTAAATTGGAAATATTTTTAGA
AGTTTACAATTAATCCAACCTGCTGCAGGGATTGGACCTATTTTCCCGACGGTTTTTCCTTTATTCCTGACGGGTTTTAGCCGTCAGAGGTAATACTATT
TCTGGTAGTGCGACTAGACAATATGAAATTATGAAAGACATAGGGCAGCTCCCTGGTTCTACTAATGTGAAAGAAGATTGACAAGGTTTAAGTTACGTCT
CACAAAGGAAATGTGAATTCATTTGAAGTATAAAATACTACTCCCTCCGTCCTAGAATATAACAAGATTTAGAGTTGGACACGGTTATTAACAAAGTAGG
TAGAAGTGGGTGATGGAGGGTTGTGATTGGATGAGTAGTGAAGGTAGGTGGGAAAAGTGAATGATGGAGGGTTGTGATTGGTTGGGAAGAGAATGTTGGT
GGAGAAGTCGTTATATTTTGGGACAAATCTTGAGAGCTAAAAGTTGTTAT