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Detailed information on CNT30110050


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004400, E-value = 4e-123

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692900Oryza longistaminataOryza sativa99.692794.69320forward
CNT30371170Oryza longistaminataOryza glumipatula99.6925.6893.75320forward
CNT30101743Oryza longistaminataOryza rufipogon99.6961.4290.62320forward

Expression of CNT30110050

Peptides detected in this lncRNA

>peptide 1 (49 aa)
FPTFRRRAFSLRKVQKCLKKLKRRSISAKVMIRRIRLCSGQVACGVESP*

>peptide 2 (35 aa)
VSDVPEESVFVEKGSKVFEEAQEEEYFSEGDDQED*

Sequence

>CNT30110050
AGTTTCCGACGTTCCGGAGGAGAGCGTTTTCGTTGAGAAAGGTTCAAAAGTGTTTGAAGAAGCTCAAGAGGAGGAGTATTTCAGCGAAGGTGATGATCAG
GAGGATTAGGCTTTGTTCGGGTCAAGTTGCTTGTGGAGTGGAGTCGCCATAGCTGTTTAGTCTTTTGTTTTTATTTTTCGTTGCGTAGAATTTTATTCTT
TTGAGAGAAACTATCCACCTCTGTAATAATTTATTATTTCGCGAATATTAATTAGCTGTTTGATAGTACTCTATTATCAATTTGTTATTGTGTGCCTCGG
CTGATTCCTGGACGAGGATTT