Detailed information on CNT30110023


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001626, E-value = 4e-22

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30575561Oryza longistaminataOryza barthii34.1521.2890.85153forward

Expression of CNT30110023

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MLIMLISWCYNIWISSFAISFTESRRCRLTPRRHRP*

>peptide 2 (38 aa)
MYHRQGGKNNLSGVYLLVICPRGNHRDDCITHYVYIFIR

>peptide 3 (34 aa)
SCSARLLQALNTNLLCSGTYLPQWRIQKINSLVS*

Sequence

>CNT30110023
AGCTGCTCTGCAAGGTTGCTCCAAGCTCTAAACACCAACCTGCTCTGCTCCGGAACATACCTTCCACAGTGGCGGATCCAGAAAATTAATTCGTTGGTGT
CATAATATGTCTAATGGTGTCATAGTATGCTAATTATGCTTATATCATGGTGTTATAACATATGGATAAGCAGTTTTGCTATAAGTTTTACCGAAAGTCG
TCGGTGTCGCCTGACACCGAGGCGACACCGGCCCTAATACTATAGATTCACCCCTGACCTTCCACCAATTTCGTGATTGTAAATGCCCATGAGGTAGACA
CGAGGACGCTGTCCCGGCACCGGAGAAGCCATGTATCACCGGCAAGGAGGCAAGAATAATTTGTCCGGTGTCTATCTGTTAGTGATATGCCCTAGAGGCA
ATCATAGAGATGATTGTATCACACACTATGTTTACATATTTATCCGAC