Detailed information on CNT30109967


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520681Oryza longistaminataSetaria italica18.5720.9185.978forward
CNT30398756Oryza longistaminataTriticum turgidum20.244.5688.2485reverse complement
CNT3067565Oryza longistaminataLeersia perrieri59.5235.8788.4250forward

Expression of CNT30109967

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MTHILFKEQCTGILLLCNPTFVFLLSELSLFLLLSSLC*

>peptide 2 (78 aa)
QTEDKLKMSSSCISSFCNKTIFMRILVVIALLLLTLGVLPFAPHSHIETSNTSRKSRLQQLLQCGMLLLQHSQVPSSL*

Sequence

>CNT30109967
CCAAACTGAAGATAAGCTGAAGATGTCGAGTAGCTGTATTAGCAGCTTTTGTAACAAGACCATCTTCATGAGGATACTTGTCGTTATAGCTTTGCTTCTA
CTGACCCTTGGAGTTCTTCCCTTTGCACCACATTCACACATTGAAACTTCAAACACCAGTCGAAAATCTCGGTTGCAACAACTACTGCAGTGTGGCATGC
TGCTATTGCAACATTCACAGGTTCCCTCCAGTTTGTGAGAAGTGCTGCAAATAATTCATTGAAGTCCATGACACATATCTTGTTTAAGGAACAATGCACA
GGCATTCTTCTTCTGTGCAATCCCACCTTCGTTTTCTTATTATCTGAATTGTCTTTGTTCCTGCTGTTATCCTCGCTATGTTGAAGCAACAGATATAAAC
CTGACAATACCATCTTTTTT