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Detailed information on CNT30109966


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693746Oryza longistaminataOryza sativa50.1940.6498.49265forward
CNT30553785Oryza longistaminataOryza glaberrima68.5699.7298.62362forward
CNT3067432Oryza longistaminataLeersia perrieri50.5737.3989.14267forward
CNT30596221Oryza longistaminataOryza meridionalis96.5910098.43510forward
CNT30101607Oryza longistaminataOryza rufipogon96.9763.9298.63512forward
CNT30576506Oryza longistaminataOryza barthii94.5199.898.8499forward

Expression of CNT30109966

Peptides detected in this lncRNA

>peptide 1 (98 aa)
LMLLHRPSHQTEDKLKMSSSCISSFCNKTIFMRILVVIALLLLTLGVLPFAPHSHIETSNTSRKSRYILISGCNNYCSVACCYCNIHRFPPVCEKCCK*

>peptide 2 (38 aa)
MTHILFKEQCTGILLLCNPTFVFLLSELSLFLLLSSLC*

Sequence

>CNT30109966
GCCTGATGCTGCTACACCGACCAAGTCACCAAACTGAAGATAAGCTGAAGATGTCGAGTAGCTGTATTAGCAGCTTTTGTAACAAGACCATCTTCATGAG
GATACTTGTCGTTATAGCTTTGCTTCTACTGACCCTTGGAGTTCTTCCCTTTGCACCACATTCACACATTGAAACTTCAAACACCAGTCGAAAATCTCGG
TACATTCTTATAAGTGGTTGCAACAACTACTGCAGTGTGGCATGCTGCTATTGCAACATTCACAGGTTCCCTCCAGTTTGTGAGAAGTGCTGCAAATAAT
TCATTGAAGTCCATGACACATATCTTGTTTAAGGAACAATGCACAGGCATTCTTCTTCTGTGCAATCCCACCTTCGTTTTCTTATTATCTGAATTGTCTT
TGTTCCTGCTGTTATCCTCGCTATGTTGAAGCAACAGATATAAACCTGACAATACCATCTTTTTTTATCAGTGACTTATTTCAAACTTGGTATAAGATAC
AATACCAGCGCAGCTATAAAAGCAAGTA