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Detailed information on CNT30109959


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596958Oryza longistaminataOryza meridionalis26.134.5690.08131reverse complement
CNT30103014Oryza longistaminataOryza rufipogon35.8611.9195180reverse complement
CNT30577529Oryza longistaminataOryza barthii31.479.8994.94158reverse complement
CNT30604829Oryza longistaminataOryza punctata22.9115.7893.04115reverse complement

Expression of CNT30109959

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MLYSVWDALGQHPLALAWLLQAAINMYPIPFGRIWLCVCE*

Sequence

>CNT30109959
AGGTTGTTTTTCCCCTTTTAGGACAGCGTACTTTCAGTTTTGCTTTTAGCATTTTTCGGTTATGCTTTTAGCATTTCTAGGACAGCATCTAGTATCTCCT
TTATGCTTTATTCAGTTTGGGATGCTCTAGGACAGCACCCACTTGCCCTAGCATGGCTGCTACAAGCAGCTATAAATATGTATCCAATCCCCTTTGGGAG
GATATGGCTTTGTGTTTGTGAATGAAAGAAAACCAGAAAATTGCCCCATCTCTTGTGCCATCCTCTTCTCAATGAGAGTAACCATGAAATACTAACACTC
CTTGATTCTACAATCTAAAAAATAAAAAAAATAAAAAAAGGAGAGGAGCAGCACCAAGATCTCCAGCCTGAACTGCATCGCTTCCAATTGGTTTGCTGAT
CGAATCAAGAAATCTTCGAGGTAAAAATGGTGGTGAGAACTGAGAACAGCATCGATCAGTGTAAGCCAGGACTGTCAATTTGTCATTGCAAAAGGAGGGG
GA