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Detailed information on CNT30109946


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005869, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552311Oryza longistaminataOryza glaberrima5.5731.2388.8999forward
CNT30575227Oryza longistaminataOryza barthii10.5825.5188.3188forward

Expression of CNT30109946

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MDERGNHIVERRPSLPLVTCSSRCGDSMYL*

>peptide 2 (32 aa)
MSITAASLLVCSCPLLLFLVVADCRAGKKRRT*

>peptide 3 (32 aa)
GSGGVAEHVADRKEEELLLLHAINHLIVPTII*

>peptide 4 (48 aa)
MKEEGEKGISYIPVKLIPTNCNYYYFSVLWCIHVTRFVHHRCILFPRL*

>peptide 5 (48 aa)
MPMANSCASVSYSFHPLPMHTFNLFFFYKSEAEVVSVLAHQPCVEWLI*

Sequence

>CNT30109946
GGAAGCGGCGGTGTTGCAGAACATGTTGCCGATCGTAAGGAGGAGGAGCTGCTCCTGCTCCATGCCATAAACCACCTCATCGTGCCGACTATTATCTAAT
ATCAATCATTTCCTTATTACTTCTCATAATCTCGCTCGCACCGTTTAGATATAAGCATTAAATTCAGGGTTACGGTATCGCTCCTTCTGATCATGGCTAT
CTGGTTTACTCCACTATCTCATAAAAACAAATNNNNNNNNNNGCTGACATATTGAAAGAACGTGTAAACTACTACTAGTAACTAGCAACCATATTATACA
TATTAAATGTTAACCTGTTACGTATTTATAGGAGGCGATGAAGGTCGCCTCTCAACTATATGGTAACCTAACCAGTCATGCCAATGGCCAATAGTTGTGC
TAGCGTATCATACAGTTTTCACCCTCTTCCTATGCACACATTTAACCTATTTTTCTTTTACAAGAGTGAAGCAGAAGTTGTTTCTGTTCTTGCCCACCAA
CCTTGCGTGGAGTGGCTAATATAATTTTTTCATTTTAAGTGCTAGACTTATCTTCTAAGTTCAGGCTCAACATATAAATTAACCCACATTAGGCGGCTCA
TGATTAGCTTTATCTTTAAGCTACAATGCTTTTAAATGGATGGATGAGAGAGGTAACCATATAGTTGAGAGGCGACCTTCATTGCCTCTAGTCACCTGTT
CGTCCCGCTGTGGTGATAGCATGTACCTGTAATACCCCGAGTTTCGAATTAGTGTATTTCGGTAAATATTAGAACAAACGCGTAAAAGTTCAACTTTTAA
ACCGTTGATCGAAGAGGCGATCAGGAACTGTGGATGCGTAGACCTCGCCGAGTAGTACAAAATAGACTATAAATTTATAGTAATCAGAGTCCGAACGAAG
TTCCGGGGATTGAATTAAAGTGGGTCATTTGATCTTCTTTTAACCTCTCTATTTAATCAACAGAAAAAAATAAAAAAAGGGAACGCTAGCAGCTAGCCCT
AGCCGCCACCGTTCCTGCGCCCGTGTCGCCGGCGCTGGTTCTACGCTGCCGCCGCTACAGCCGTGGCCGGTCACCGAAGCCATCGTCATCCGTCGCCACC
GGTGATCCCTTTCCGTTTTTCTTCTTTCCGGTGAGCTCTGTTGCTGTCAACCCGATCTGTTGCTGCTGTGTGCTTTGGTCCCTGTTGCCGCTACTAATGT
CCATCACTGCTGCCTCTCTGCTTGTCTGCTCCTGCCCCCTGCTCCTGTTCCTGGTGGTGGCTGATTGTAGAGCAGGGAAGAAGAGAAGAACATGAAGGAG
GAGGGAGAGAAGGGGATATCCTATATACCTGTAAAGTTGATCCCCACTAACTGCAATTACTACTATTTTTCTGTTTTGTGGTGCATCCACGTCACCAGAT
TTGTTCACCACCGTTGTATTTTATTTCCAAGGCTGTGATTAGTCTAGATGTAGCTTCAGTCTGCAGACCAAAATCTATCAAGTGAGTCTAGCCCAGCGAG
GAGGCCGGCCCCAAACCAATTAACTCCCATGATAATTGTGTTGCATGCATCGCTTAATTTTCTATCTTAACTACTACCACCAATAAACTAAACAGTTACA
TGCATATATTCATCAATTGCATTTCTTGACTCGACCTTTCCTAAGAATGGGAAATTTAGGGAATTTGGTGGATATTTCCAAACTCTTTGTTTTTCTTACA
AATTATTACTGCTAGGTAGTCAGTTTTAGTCCCTAGTTGTTTCTAATTTATATATAAGACGATCCATTTCCGGTAGC