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Detailed information on CNT30109906


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696585Oryza longistaminataOryza sativa35.3184.7797.66256forward
CNT30522452Oryza longistaminataSetaria italica31.7234.1284.35230forward
CNT30577977Oryza longistaminataOryza barthii39.0310096.47283forward
CNT30551656Oryza longistaminataOryza brachyantha32.2827.4387.18234forward

Expression of CNT30109906

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MAPGRGMARWWRCGAERCSRSCGGRRQGGR*

Sequence

>CNT30109906
GTGAATACTAATTTATGGGATCTTATTACGAAGTGGAAAGAACATAAATACACAAATAAATATCATATTAATTAAATTAATTCCAACAAACAAGCAAACG
AATCCTGAGACAAATCTACCTGATACTAACACACCTGTATTGACTCAAACCTCACAAATCAACCTGAAACCTTATTCGATCGACCCAAGAAACTCAAAAT
CAACGAACACATAAAGCTGTCTGCGCTACTCCAACCTTGACAACAATATATCATAATGGCATTAAGCTAATGCAGAGCTGAAATTTGAAAAGAATCATAA
TAATGTGTGAGCTCGATCGACGGCTCAATTAGTTCCTCGCCGGCGGGTGGTACGGGCTCGGTGTTCCGTACGACGGCGTCGGCGTCGGCTTAGGGTGCGG
CGGCTGGTCGGGGTGCGGCTTGGGCGCTGGCTTGGTCGACGGTGCGGCGGGCGCCGGCTTGTTGTGGTGGAAGTGGTCGAAGAAGTGCTTCTTGATGGGC
TCGCAGATGGTCGCCGACGCGCACACCGGCGACGCGTAGTGGGTCTTGCCGGCGATGGCGACGAAGGTGCCCTCCGATATTGGCACGATCTTAGATGGCT
CCTGGCCGGGGCATGGCTCGTTGGTGGCGCTGTGGAGCTGAGCGATGCAGTCGGAGCTGTGGAGGTCGGCGTCAAGGGGGACGCTGAAGGCACCGGTGCC
GTCGAGCTTTCCGGTGGCCTTGCTC