« Back to Oryza longistaminata search


Detailed information on CNT30109903


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006287, E-value = 1e-177

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694968Oryza longistaminataOryza sativa91.4387.0197.8683forward
CNT30102658Oryza longistaminataOryza rufipogon90.6389.9197.64677forward

Expression of CNT30109903

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MLVILFGGHRLTYHTRICQLIQCIAVLIIVLKTW*

>peptide 2 (44 aa)
XXXXRAAAARPIARWRGTPHLLAPAPPVASASSSRHKRRRLLSP*

>peptide 3 (50 aa)
MVMELLLFGEDRMVAKIGQQCMQLPSSFLKFMDKSDFGTWELSLWLYSMF*

>peptide 4 (89 aa)
XXXXPEPPLLVPSRAGAAHRICSRRRLPSLRPPPLATNDAASSRRRRRLSSDLTELNIGAAFSVRSPPSGHCVFPVKNLKDLVIFYYLV*

>peptide 5 (52 aa)
XXXXPSRRCSSHRALARHTASARAGASRRFGLLLSPQTTPPPLAVDAASRQI*

Sequence

>CNT30109903
TGNNNNNNNNNNCCCGAGCCGCCGCTGCTCGTCCCATCGCGCGCTGGCGCGGCACACCGCATCTGCTCGCGCCGGCGCCTCCCGTCGCTTCGGCCTCCTC
CTCTCGCCACAAACGACGCCGCCTCCTCTCGCCGTAGACGCCGCCTCTCGTCAGATCTGACGGAGCTCAACATCGGTGCGGCCTTCTCCGTTCGGTCTCC
ACCATCCGGCCACTGCGTCTTCCCCGTCAAGAACCTCAAGGACCTCGTCATCTTCTACTACCTTGTCTAGGTTGAGGAGCTGGCTGGCTGACAGAAACAT
AGCACCATGGTCATGGAGCTACTATTATTTGGTGAAGATCGAATGGTGGCAAAGATAGGACAACAATGCATGCAGTTACCATCTTCATTTCTTAAATTTA
TGGACAAATCAGATTTTGGGACCTGGGAACTTAGTTTGTGGTTGTACTCAATGTTCTAGGTGTTGATGTCCTTTGCTTCCGATTTTATTTTACCTTACTG
TGGTGATGTATAAGAAAAACTTCTCAGTGGGCTCTTTGCTAAACACTAAAATTTAAATGCTTGTAATATTGTTTGGAGGACACAGATTGACTTACCACAC
GCGAATTTGTCAACTGATACAATGCATAGCAGTGTTAATTATCGTTTTAAAAACTTGGTAGTATTTTCATTTTCTTTATTTAATGAACTGTTTTCTTAAT
TTTGGATTTCTTCTATATATGCCATTGTAGAAATTAGTTATCAGCTT