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Detailed information on CNT30109832


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691044Oryza longistaminataOryza sativa58.8423.7794.82193forward
CNT30555251Oryza longistaminataOryza glaberrima27.4422.1191.1190forward
CNT30596989Oryza longistaminataOryza meridionalis27.4422.1191.1190forward
CNT30369658Oryza longistaminataOryza glumipatula58.2387.2192.67191forward
CNT30575314Oryza longistaminataOryza barthii92.6830.0795.72304forward
CNT30115936Oryza longistaminataOryza nivara58.8425.1695.34193forward

Expression of CNT30109832

Peptides detected in this lncRNA

>peptide 1 (52 aa)
YLIMAFRHRLFLVFVTVEIVMLIVRSTASDFRSGSSGSSPICNACPCCPCKC*

Sequence

>CNT30109832
CCTATTTGATCATGGCTTTTAGACACCGCCTGTTCCTTGTATTCGTGACGGTGGAGATCGTTATGCTTATTGTCCGAAGCACGGCATCAGATTTTCGGTC
AGGTTCATCAGGGTCAAGTCCGATATGCAACGCATGTCCATGCTGCCCATGCAAATGCTGATCGTCATTACCATGTCGTCGTTCTCTTCGTAACCGCATT
GAGCAAATTCAATTGTTTTGATGTTTTGTATTTCCTCATCAGGTTCTATTTTGTAATATACCAATTCAGAAGCACATACATGTACAATTCAACACATCCA
ATATTTATTGATCATCAATGGCTTATCA