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Detailed information on CNT30109530


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690067Oryza longistaminataOryza sativa53.9399.5998.77487forward
CNT30552115Oryza longistaminataOryza glaberrima95.2479.798.26860forward
CNT30574809Oryza longistaminataOryza barthii91.4793.8698.31826forward

Expression of CNT30109530

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MKLTQAAVLQYPILSRNGTNRGTRLHRSGSSCGWQSKAIV*

>peptide 2 (48 aa)
MTVCNINRCMRPASACWSSVLTRIECGDTRSDHLRTGDCRRGRRSRSN*

>peptide 3 (60 aa)
MWLAIKGHCLTADNLQMKGWPNQHDCLQYQQMHETCKCLLVECAYKNRVWRYKIRPFEDW*

>peptide 4 (36 aa)
MFLIRSRQRLVAFLVSNFVTLCIHLISLSTIGWLLL*

Sequence

>CNT30109530
TCCCCACAGCCGCGGCCGCAGCCGCCGATGTAGTGAACTTGTCGCATCACATCTGAGCTGCTCAAATTGGAGGTGACGAATCTTACGACTCATCTGTTCC
TACAACAAGAGATCCATTGCACGCACAGATTGAGATTTTAGCAAAGTTTTTAAGTTCAAATCTGTCCATTTAGAAGGTGATGAAGTTAACACAAGCTGCT
GTACTGCAATACCCCATATTAAGTAGAAATGGTACAAACAGGGGAACTAGGCTCCATCGATCCGGTTCTTCATGTGGTTGGCAATCAAAGGCCATTGTTT
GACGGCAGATAACTTGCAAATGAAAGGGTGGCCAAATCAGCATGACTGTTTGCAATATCAACAGATGCATGAGACCTGCAAGTGCTTGTTGGTCGAGTGT
GCTTACAAGAATCGAGTGTGGCGATACAAGATCAGACCATTTGAGGACTGGTGACTGTCGACGAGGCCGGCGTTCGAGAAGCAATTAAGAAAAGCTTTTG
ATTCGCTGTGTTTTATGTTAAGCTGTCTAGTTTGGAAGGAGAGGAGATGCTAGAATTTTCGACCAACGAGTGAAGTCTACCTTGCAGCTGCTTGGGGAAG
TCAAAGAGGAGATCATGCTCTGGAGAGAAGCTGGAGTGTTCATGAATCCTTAGGAGTAGTTTGCAGCCCTAGCGACTACCAGCTGCTGCTGGCATGTTTC
TCATCAGGTCTCGGCAGAGGCTCGTTGCTTTTCTTGTATCTAACTTTGTAACATTATGTATACATCTTATTTCACTTAGTACAATTGGTTGGCTGCTTCT
TTAATTCGGCCAACCCAGCCAAAATGTGTCCGATGCATACATATATTCTGTATTGAGATCCCAAAAGACAGAAATAACACACGGTTATGATGACATGAAC
TGG