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Detailed information on CNT30109429


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30101538Oryza longistaminataOryza rufipogon74.6567.3296.83789forward
CNT30576175Oryza longistaminataOryza barthii75.5958.0796.37799forward

Expression of CNT30109429

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MRGQSIAHNKMVRVTRVNCHWLEHGLFLSKISFFCNIYWLTYLSSVGAHK*

>peptide 2 (35 aa)
MDFDHGSEHGIFSIEFYSYSFFSLLLINALLSSSD*

>peptide 3 (64 aa)
ATGALIEPCYDFSIFSRVIAYIAPGLIMNEVMNLTTAFQLLFGMIYESMFSELHALDYCKHVDH*

>peptide 4 (50 aa)
MLLIVVCATVHVTHFSIWLSLIMNSRCSSLFAHSYSYATSCFCICITVNC*

Sequence

>CNT30109429
ATGCAACTGGGGCATTAATTGAACCATGTTACGATTTCTCCATATTCAGTCGAGTGATTGCTTATATTGCACCTGGTCTGATCATGAATGAGGTTATGAA
CCTGACTACTGCTTTCCAATTGCTCTTTGGGATGATATATGAATCTATGTTCTCTGAACTGCATGCTTTAGATTATTGCAAACATGTTGACCATTAAGTA
TAAATAATGTAGAGTTCTCAATTTGCAGTTCATTTTGATATATTTTCATTTTTCTATGTTCTTTGCAGCTGATACTTGAAGGAAATGCTTCTGATTGTTG
TGTGTGCAACTGTGCATGTCACTCATTTTTCAATTTGGTTAAGTCTAATCATGAATTCCAGGTGTAGTTCCCTCTTCGCACATTCATACTCCTACGCAAC
ATCCTGTTTCTGCATATGTATTACCGTTAATTGTTGAAACTGCATCATAAACAAATTTTGCACTGAGAATATTTGACTTCGTACCTTTGTGGAGAATGCG
TGGCCAGAGCATAGCTCATAACAAAATGGTAAGAGTGACTAGAGTCAATTGTCACTGGTTAGAGCATGGACTGTTTCTAAGTAAGATTTCTTTCTTCTGT
AACATTTACTGGTTAACATATCTGAGTTCTGTGGGTGCTCACAAGTGAGCGTATTGTTTATGTGTATTGACATATTGTTTTTCTTTTAGACGATAAAGAA
ATCATGAATTTGTAGATAATGTGGGCCATTCCTATGGGCTTCTCCTTTTGCATCCACATATTACATTTTTAAGTCTTCAATATGAACAAGAAATGATCTT
TCTTGATTGGGAAAAAAACAATTATTTCAGGTCACTGGTTATTTCTTGATTGTTGAAATGGACTTTGATCATGGATCAGAACATGGTATTTTCTCCATTG
AATTCTACAGTTACAGTTTCTTTTCCTTGTTACTGATCAATGCACTTTTGTCATCATCTGATTAGTGTTATCATCTGAAAACCAATCCGTATTTCAATGT
GTTTTAATCTTCATCTGAAACCCATTGTGCCAGCTCTGTTCCTTGACCACAAATCCA