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Detailed information on CNT30109186


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006472, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695229Oryza longistaminataOryza sativa30.6744.5488.75400forward
CNT30552747Oryza longistaminataOryza glaberrima46.0131.4395.5600forward
CNT30102620Oryza longistaminataOryza rufipogon46.451.898.35605forward
CNT30575420Oryza longistaminataOryza barthii46.0129.7695.33600forward
CNT30115521Oryza longistaminataOryza nivara55.9865.1299.18730forward

Expression of CNT30109186

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MSEVFHVFFLMKMIWSCGKLLWQSLLLSRVKIFMWLALKGRCLMADNLQKRGGLIRRIAPYAT*

>peptide 2 (35 aa)
KKVALRKFENQYVLLPMNITSWCFRFCLSLERKYT*

>peptide 3 (35 aa)
MASRRSFRDYLRKVFGTLFFFRDCLSKLYGCAALW*

>peptide 4 (33 aa)
MVVQLFGDIKEEITIWREAGFMVGEKRLALFLL*

>peptide 5 (31 aa)
MELWQAALAIPVAVQSKDFHVACAKGQMPHG*

Sequence

>CNT30109186
AAAAAAGTGGCACTGAGGAAGTTTGAGAACCAGTATGTACTCCTACCAATGAATATCACATCATGGTGTTTCAGGTTTTGTTTAAGTTTGGAAAGAAAAT
ATACATAATTTGTGGCAAATAATGTTCAGATTTGCAGATTAACATGCTACCAAGGTCAAAACTGTATGTAATACATGCAAGTGTCAGATTTTTTTTGTTC
CCCTACTTTACTAAAACTGTAAATTAGGTTTATAACGTGTTTCTGATATATAACAATAAGAGAAATCATGATATCGAAAAGTATCTGTTAATGCTATAAG
GCAAATATATTGGCTTACTTCTATTGTTTATAATACAGGTTGACATTGTGGCCAACTGGAGATTTTGGTAAAATCCTATCATGTTTCACCATGGCATTTC
ACTGTTTGGCGCACGGTATTTAGGAGCTATTTGTATAGTAAATGCTGGAATATTGAAGTAAATTATATGTTCAGCTTATTAACTGCATTGCGATAAGCTT
TGATCTAGATCCGGTTTCAATTTTCATTTGCGTGGTCGCATCCTTTAATTTATATAGCTTCATAAGAGTATACTCCGAAGTACATGCCGTTTTATGTATT
TTTATGCCTTCATATTCTGATTGTCTAATGGCTCTAAAACAACAGACGTAAACTACGATGTCTGAAGTTTTCCATGTTTTCTTCCTTATGAAAATGATAT
GGAGCTGTGGCAAGCTGCTTTGGCAATCCCTGTTGCTGTCCAGAGTAAAGATTTTCATGTGGCTTGCGCTAAAGGGCAGATGCCTCATGGCTGACAATCT
ACAGAAAAGAGGTGGCCTCATCAGGCGAATTGCTCCCTATGCAACCTGACATTTCAAGATGACACCCAACCTTTTTGTTCAATGTGCTTTCACAAACAGG
ATTTGGAGACTGCTCAGGAGCTAGGTGAATGTTGGCTTTCCGCTTCCTAGTGACCTCAATGTAGACTTGGCTGATTGGCGGATGGCTTCAAGGAGAAGCT
TCAGAGATTATCTCAGAAAAGTTTTCGGTACACTCTTCTTCTTCAGAGATTGTCTCAGCAAGTTGTATGGTTGTGCAGCTCTTTGGTGACATCAAAGAAG
AAATCACAATCTGGAGGGAGGCAGGCTTCATGGTAGGCGAAAAACGATTGGCATTATTCCTTTTGTAGTTTTTTCTCTCTCGCTCTTTGTAACCGGTTTC
GACAACTTCGTGTGGACGCTTAGTTTGTAACACCATCTCACAATCTTAATGAATTTGCTTAGCCTACTCTTGGGCCAGTCTGGCTAAAATAAATGTAATC
AGAG