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Detailed information on CNT30109111


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT007480, E-value = 5e-111

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554083Oryza longistaminataOryza glaberrima69.9327.3783.33300forward
CNT30369237Oryza longistaminataOryza glumipatula38.2315.0792.07164reverse complement
CNT30103539Oryza longistaminataOryza rufipogon14.4522.8887.162reverse complement
CNT30577507Oryza longistaminataOryza barthii44.7614.5885.94192forward

Expression of CNT30109111

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MVICQKPYHFYSTIEPNKWQKLQQVSVYSFSCQPLKA

Sequence

>CNT30109111
TGGAATATAACATCCCGGCCTTTCTTCAAAAAGAGCTATAGCCAATTATTATAAAGTAGCACCCTAGAAAAGAGTGTAGTTCAGATAAAAAGAACACACC
AAACAAAAACAAAGGAAACCAAGCCAAAATAAGGAGAACACATTTATTGAAGCCTACTTGTGAACCTCCACCTATGATTGGCAAATAGTTGAATAACCAT
CGACTCCAACTTGCGGCACGCAACTTTTAGGAACCACCCATCATCCTCACATCTTTGTAGTTGTGCCCAAAACCGGAGCCAGTGCGTTGCCCTGAAATTA
CTTGCATATAGGAAATAGATGGTGATTTGTCAAAAACCATATCATTTCTATTCAACCATAGAACCAAACAAATGGCAGAAGCTCCAACAAGTATCAGTTT
ACTCTTTTTCTTGTCAACCCCTAAAAGCC