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Detailed information on CNT30109013


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697223Oryza longistaminataOryza sativa62.7346.0996.31271forward
CNT30596295Oryza longistaminataOryza meridionalis66.4431.3796.86287forward
CNT30495712Oryza longistaminataDigitaria exilis14.8126.2390.6264forward
CNT30116763Oryza longistaminataOryza nivara20.1439.3798.8587reverse complement

Expression of CNT30109013

Peptides detected in this lncRNA

>peptide 1 (59 aa)
SRHLVPWGAHLPLWSTSPMPALLQTWEEEGKEKKGKEGSGGNRGEDGNVGFDYPLPMEA*

>peptide 2 (61 aa)
LAVIWYPGAPTSPSGRPPPCLPCCRPGKKKGRRRKGKKEAEEIEVKMEMWGLITRCPWRPR*

Sequence

>CNT30109013
CTAGCCGTCATTTGGTACCCTGGGGCGCCCACCTCCCCCTCTGGTCGACCTCCCCCATGCCTGCCCTGCTGCAGACCTGGGAAGAAGAAGGGAAGGAGAA
GAAAGGGAAAGAAGGAAGCGGAGGAAATCGAGGTGAAGATGGAAATGTGGGGTTTGATTACCCGCTGCCCATGGAGGCCTAGGTGATGCCACTTCGGAAT
GCAACTAGAGTTCATCTCGCCATCGGTGAAGGCAAGTAAACGTAGCGGTGGTTCGCTACAGCTTTGACTTGTTATTTGATTCTACCTCCACGTTGAAATT
ATATATCATCAACCAAGATTATTATATGTTACACATAGGATTTACCTATCTGAATCAAACTTATTGATTTTACAATGTTTATGGTTATACTTTATGCTCT
TGGTTATAATAACCTTATATTGATCTCCATCG