Detailed information on CNT30108945


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000359, E-value = 2e-99

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697715Oryza longistaminataOryza sativa27.5739.5194.19241reverse complement
CNT30104346Oryza longistaminataOryza rufipogon29.2920.4693.75256reverse complement

Expression of CNT30108945

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MRCKSQITERTTFILRIYRHTEQVIELSPLLIRAAIFRL*

>peptide 2 (34 aa)
MTQQKYIRVQRVICLCQKNGVDFPIFLIGKNSST*

>peptide 3 (41 aa)
MCSIGDILILFSNCRLEYLVVHVYGLKSSTILYRSGYFLMLD

>peptide 4 (45 aa)
MSSLSTTELLRVCKHGERDVSLKHNQFISNFNVRLFFFSQQRKRK*

>peptide 5 (45 aa)
LPLPILGELQIRFGGHRNRWSRPLVSSPVNRFDTLLHTFSTKSTW*

>peptide 6 (72 aa)
MLGCFSLASNARENSITISMLRICVFDRRSSYVLHWRYSYSLLKLSIGVFGRSCVWLKIFNNIVSKWLFSHVR

Sequence

>CNT30108945
TCTTCCTCTCCCTATCCTCGGTGAGCTACAGATCCGGTTCGGGGGTCATCGGAATCGATGGTCTCGGCCATTGGTCTCCTCGCCGGTGAATCGTTTTGAT
ACCCTTCTGCATACATTTAGCACAAAATCCACATGGTAAGGCAATGGTTTTGACTTGCCATTGAACATTTGCATTGCGTTTGCTGGTGTTTTTACATGAT
CCCCCATCTTGCCTTAGGTTCTGTGGAGAAATTGATGGGCTAGGATGAGGTGTAAGTCGCAGATTACAGAGAGGACGACTTTCATTCTGCGCATCTACCG
TCATACTGAGCAAGTTATCGAGCTTTCTCCTCTCTTAATCAGGGCTGCAATATTTAGATTATGACGCAGCAAAAATATATTAGAGTACAAAGGGTAATTT
GTCTTTGCCAAAAGAATGGAGTTGATTTTCCTATCTTCTTAATAGGAAAGAATTCAAGTACATAGTCTCTTCTAGGTAATTTCTTCCAGAGTTTCAGTGC
TGTCTGGGATTACAAGCAGTCAATGCCTCTTCTTAGAAAAAACAAGGTTGGTATGCCGCATGTCTTCACTTTCTACCACAGAGCTATTGCGCGTTTGTAA
ACATGGTGAAAGAGATGTATCTCTGAAGCATAATCAATTCATTAGCAATTTCAATGTTAGGTTGTTTTTCTTTAGCCAGCAACGCAAGAGAAAATAGCAT
AACAATTTCAATGTTACGCATTTGTGTATTCGACAGAAGGTCCAGTTATGTGCTCCATTGGAGATATTCTTATTCTCTTCTCAAATTGTCGATTGGAGTA
TTTGGTCGTTCATGTGTATGGCTTAAAATCTTCAACAATATTGTATCGAAGTGGTTATTTTCTCATGTTAGACA