« Back to Oryza longistaminata search


Detailed information on CNT30108659


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8GU88|AB39G_ORYSJ, E-value = 6e-84

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552520Oryza longistaminataOryza glaberrima95.7746.3999.7656forward
CNT30345961Oryza longistaminataEragrostis tef7.4521.1690.251forward
CNT30150571Oryza longistaminataBrachypodium distachyon35.0429.8185.42240forward
CNT30100206Oryza longistaminataOryza rufipogon81.7537.9999.46560forward
CNT30575121Oryza longistaminataOryza barthii74.3169.2599.61509forward

Expression of CNT30108659

Peptides detected in this lncRNA

>peptide 1 (59 aa)
QAVDDQTIHDSLEEDVCYDHLPAQMHMVERSTFQRPFLGRTLFAQRLQLVGQSGRFEFQ*

>peptide 2 (40 aa)
MRAITVVKKILVAVYDGFLQYDLCCFHRQAMHCVKKGCEN*

Sequence

>CNT30108659
ATCAGGCTGTAGACGATCAGACCATACACGACAGTCTGGAGGAAGATGTGTGCTATGACCATTTACCTGCGCAAATGCATATGGTAGAGCGGAGTACATT
CCAGCGGCCTTTTCTCGGTAGAACACTGTTCGCTCAACGTCTACAATTGGTTGGACAGTCTGGCCGTTTTGAATTCCAATGAAAAGGACTGCTGCATACA
TGGATCCCAAAGAGTTGAACAGATCCAATCTCTTGTTTCTGTAGGCAAGATAAGCGCAGGTTCAAGAATATAGTGCCGAAAATGAGGGCTATAACTGTTG
TGAAGAAGATTCTAGTTGCTGTATACGACGGATTTCTCCAGTATGATTTGTGCTGCTTCCACAGGCAAGCCATGCATTGTGTGAAGAAGGGCTGTGAAAA
TTGAGTTGGGAAGTGCAGGTCCGTTGATCCAGGTGGAGGTGTGCTTAATTCACTTATCAATGTTTTATTCCTCCTGCAATGGTGCAATTGAATCAGTGAT
ATAACACAGAAAAAGCAGAAAAAGAACATTTTGGGGGGCTTTTGTCCTGAAACATACTGGTATAGATCAGAATTCCTGTATACTTCAGCAAAGTTGATGC
CAAGGATATCTTCTTGGGCTAGGGTGGTAACCTCCAACATCCATGTTGCAGGATTGTAACCATCCTTGATTTTCCTCACTCCTTG