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Detailed information on CNT30108388


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696895Oryza longistaminataOryza sativa22.3431.9294.53128forward
CNT30596177Oryza longistaminataOryza meridionalis2623.8895.3149forward
CNT30370499Oryza longistaminataOryza glumipatula27.2321.6196.15156forward

Expression of CNT30108388

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MVSVIRFEYEMVREIGLNLVGSNLIESEMV*

>peptide 2 (93 aa)
MVQSGSTSNQKERVFFNFCCLCFWNQTCRSCWWREPNLDQQPFCCFLLLIFWFSNFLLLIFVVLQVFLPVCCLLLNYCLRPEVSETVIRLNLR*

>peptide 3 (57 aa)
MQVLLVEGTEPGPATFLLLFAADFLVQQFFAADFCGAASVFTSLLLAVELLLEAGSI*

>peptide 4 (92 aa)
GGARQHMRQHRAAANGGGGVRTAAPSPSIPHGHCICSVVDRGLRWFSQVQLQIRRKGCSSTFAAFASGIKHAGPAGGGNRTWTSNLFAAFCC*

Sequence

>CNT30108388
CGGTGGGGCCCGGCAGCACATGCGGCAGCATAGGGCAGCGGCAAACGGCGGTGGAGGTGTGAGGACGGCAGCACCAAGCCCCAGCATTCCACACGGGCAC
TGCATTTGCTCTGTTGTTGATAGAGGGTTAAGATGGTTCAGTCAGGTTCAACTTCAAATCAGAAGGAAAGGGTGTTCTTCAACTTTTGCTGCCTTTGCTT
CTGGAATCAAACATGCAGGTCCTGCTGGTGGAGGGAACCGAACCTGGACCAGCAACCTTTTTGCTGCTTTTTGCTGCTGATTTTTTGGTTCAGCAATTTT
TTGCTGCTGATTTTTGTGGTGCTGCAAGTGTTTTTACCAGTTTGTTGCTTGCTGTTGAACTATTGCTTGAGGCCGGAAGTATCTGAGACTGTTATTAGGT
TGAATCTGAGATGAACTATTGTTTGAATTGTGTTGTATTCTGATTGTATCTGTTATTAGTTGAATCTGAGATGGTATCTGTAATTAGGTTTGAATATGAA
ATGGTACGAGAAATTGGATTGAATTTGGTGGGCTCAAATTTAATTGAATCTGAAATGGTATGAGAAGTTGGAT