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Detailed information on CNT30108239


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695323Oryza longistaminataOryza sativa23.3821.7699.42173forward
CNT30103001Oryza longistaminataOryza rufipogon23.3825.499.42173forward
CNT30577269Oryza longistaminataOryza barthii23.3843.03100173forward
CNT30117528Oryza longistaminataOryza nivara23.3826.7499.42173forward
CNT30604452Oryza longistaminataOryza punctata12.5721.2392.4793forward

Expression of CNT30108239

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MLYSSLSSPSSTSSIRLSNPIRNSTLGNRGGHVCPEHMLVLSKAAT*

>peptide 2 (51 aa)
MGPGTMGPTEVNKIYIFKVLRQFYMQPSTSSHSSLTSPSSIYSRRLSNSRC*

>peptide 3 (56 aa)
QSERASYSSCWPAVERDRITLPDEQRWDRSWIVRASVRPADRRGGRELRFWLCSCW*

>peptide 4 (62 aa)
VKASELATPAAGRPSRETGSLCRMSSGGIDRGLCAPPSVLPTGAAAASLDFGCAPAGRRLIY*

Sequence

>CNT30108239
GTCAAAGCGAGCGAGCTAGCTACTCCAGCTGCTGGCCGGCCGTCGAGAGAGACCGGATCACTTTGCCGGATGAGCAGCGGTGGGATCGATCGTGGATTGT
GCGCGCCTCCGTCCGTCCTGCCGACCGGCGCGGCGGCCGCGAGCTTAGATTTTGGCTGTGCTCCTGCTGGTAGGAGGTTAATTTACTGAGGGATCTCTCG
ACCATCCTGAAGAATATGAGGTGTCCGAGATGGGACCGGGGACCATGGGCCCCACCGAGGTCAACAAGATCTACATTTTCAAGGTACTAAGACAATTTTA
CATGCAACCATCAACATCCTCACATTCATCATTAACTTCTCCATCATCGATATATTCGAGAAGGTTGTCTAATTCAAGGTGTTGAAGATGTTATATTCAT
CATTAAGTTCTCCATCATCGACATCTTCGATAAGGTTGTCCAATCCAATAAGGAACTCTACATTGGGCAACAGGGGTGGACACGTGTGCCCTGAGCACAT
GCTGGTCCTAAGCAAAGCTGCCACCTGAGAAGAAAACGCAGATCGACCAACGATGGGCCCCTTGCCCCGGGCTCTCCTCGAAGGATTCCGTCCAAGATAA
ATGCTTTTGTTTAGCCCGTGCTCAGTATTAATCACACTGAAGAGTAAGTTAGGGTACAACTCACCCTCACCACAAGAGTCGTAGCGCTGCATGGTGCACT
TTGCACACCCGTGTCCACTGAAAAAAGGTGGGAGAGGGGG