« Back to Oryza longistaminata search


Detailed information on CNT30108001


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692983Oryza longistaminataOryza sativa38.3531.6892.16153forward
CNT30553409Oryza longistaminataOryza glaberrima52.3833.4484.21209forward
CNT30596132Oryza longistaminataOryza meridionalis55.3951.0484.16221forward

Expression of CNT30108001

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MAMDGRFRSVSDPFAVVQLSPEPNPPMQLKNLR*

Sequence

>CNT30108001
GTCATCTTGAAACTCTGCACCTTCTTCTCCTTGCTGAACACTAGCACTGGCGGATCGACGGTCATCTCGACACCAGCAGGGGGGTAGAGGAACGCCTTGT
ACCTGGCATTGGCCTGGCCAACATTGGTGACGGTGCGCGTTGTGGCCTGGAATGTCTTGAGGTTGGGGATGGCGATGGACGGGAGGTTCAGGTCAGTAAG
TGATCCTTTCGCTGTGGTGCAATTGTCCCCTGAGCCTAATCCTCCCATGCAGTTGAAGAATTTGAGGTAATCAGATGCGGTGATGTCGTAGATAAGGCCT
GGATCAGCTGCCATGACCGGATTAACAAACCCTGCTCCATAATCAAAAGGATCAGCAATCTTTTGAACTCTTCCATTAGCTTGTATTGGCATCCCGTTG