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Detailed information on CNT30107943


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690536Oryza longistaminataOryza sativa49.1970.4391.21455reverse complement
CNT30553284Oryza longistaminataOryza glaberrima23.3543.8188.89216forward
CNT30369160Oryza longistaminataOryza glumipatula49.19101.7993.63455reverse complement
CNT30102586Oryza longistaminataOryza rufipogon54.5932.3395.45505forward

Expression of CNT30107943

Peptides detected in this lncRNA

>peptide 1 (52 aa)
CVGYTLVWDINNVPLPLLQVSWLCICFCSFHGMMWAFICANIHKLLAFLHFA*

>peptide 2 (33 aa)
MTVPFGYISRMASVCTPSLRSNTICLEPLHYSH*

Sequence

>CNT30107943
GTGCGTAGGATACACACTGGTCTGGGATATCAATAATGTTCCTCTTCCATTGTTACAGGTTTCATGGCTTTGCATATGCTTTTGTAGCTTTCATGGGATG
ATGTGGGCCTTCATTTGTGCGAATATACACAAGTTGCTGGCATTTCTTCATTTTGCATAGTACAAACTCTGCTTTTATGTGCAAATGAGGCCATATGAAC
AGTTCATCACCATGAGGCTTCAATTCATAGTAACCAGCAAGGTCACAAATTTATAATAACAGGATTGATGTGCAAATCTGACCAGAAAAGGGAGTAAACT
ACAGACAAATCAGGACTCTTTTCACTTTTTACTGATGACATGCTTCCGCAGTTAATGATGCTTTTATTGATCCACTACTTCATCCACTCCATGCAGTACA
CCTGTCAAATGTGCCTGCTTTGATTGTTTTGTATACAACAATACAAGTACCCACCTCTTTCCTCTTGAGAAGTACCCACTTCTCCATCAACCCCTTTCCT
TCTCTCTAGGGTGCATCCTAAACTGCCAGGATATATGCCATGTGGTATGCGTTATTTTTTGCGTGCACGTGTGGATCATGACATGACATTGCTACATGCA
TGACTGTCCCTTTTGGTTATATCTCCAGGATGGCATCAGTATGCACCCCTAGCCTTAGAAGCAACACCATTTGTTTAGAACCTCTGCATTATAGCCACTA
ATGTAAATAGCTGTTGTCATATATATGGTGTTTGCTTCTTAAAATCCTTTTGCTTTACATAAAACTGCAATCCAGACTATGAACGGACACTTATGGTTGA
AATCCTATAGCTCTTAATTATTACTACCTCCGTTTTTTAATAGATGACGCCGTTGACTTTTTCTCACATGTTTGACCATTCGTTTTATTCAAAAATTTTA
TGCAAATGTATAAGATATAAATCAC