Detailed information on CNT30107886


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001453, E-value = 2e-110

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696200Oryza longistaminataOryza sativa63.1349.991.22262forward
CNT30555520Oryza longistaminataOryza glaberrima67.2358.6193.91279forward
CNT30369710Oryza longistaminataOryza glumipatula63.1351.6892.75262forward
CNT30117765Oryza longistaminataOryza nivara60.48100.891.24251forward
CNT30603487Oryza longistaminataOryza punctata53.7376.1190.13223forward

Expression of CNT30107886

Peptides detected in this lncRNA

>peptide 1 (31 aa)
PSFLCTVLGVLSPSQDFLFHRSLAPYDGSRN*

>peptide 2 (69 aa)
MMDQETSCKNGMRKRRGTRGVSFQVLAMTCLHEGMGLATQSHDMISLSLEYCNMLIRLLVFRHNGLIKY*

Sequence

>CNT30107886
CCCTCCTTCTTGTGTACGGTGTTAGGTGTTCTCTCCCCTTCACAAGATTTCCTCTTCCATAGATCTCTTGCACCGTATGATGGATCAAGAAACTAGTTGC
AAAAACGGAATGAGAAAGAGGAGAGGAACAAGAGGAGTGTCTTTTCAGGTACTTGCCATGACATGTTTGCATGAAGGGATGGGATTAGCTACACAGTCGC
ATGACATGATCTCACTTAGTCTTGAGTATTGTAATATGCTGATAAGATTACTTGTGTTTAGACATAATGGGTTAATTAAATACTAGTTGTTGACCATTGT
TTAGCTACTTTTTTTTCAAGCCTATCCCTACATGTCAGTCAATTGTTGTATCATAACCTTAATCTATATGTTGATGCTTCCGCGATGTTTTCTTGTCTAA
GGTAGTTGTTGCCGA