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Detailed information on CNT30107547


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553434Oryza longistaminataOryza glaberrima96.2626.1799.1335forward

Expression of CNT30107547

Peptides detected in this lncRNA

>peptide 1 (28 aa)
MQPRERLSRQLGELHAHFLHRGHPFPPAA

>peptide 2 (29 aa)
XXXXLRLAPSLSVCFGVSVGSGSHCLSQV*

>peptide 3 (43 aa)
MLNKHRKVVLYIAKPQCSLESAFPANSESSTPTSSTAATHSRRR

>peptide 4 (46 aa)
GXXXXAPSALTVCLFRCLCWFRLSLFVSGLKYEKKEGPAIDLKCLF*

Sequence

>CNT30107547
GGCNNNNNNNNNNTTGCGCCTAGCGCCCTCACTGTCTGTCTGTTTCGGTGTCTCTGTTGGTTCAGGCTCTCACTGTTTGTCTCAGGTCTGAAATATGAAA
AGAAAGAAGGTCCTGCTATTGATTTGAAGTGTTTATTTTGAAACAGTTGCCGCAAAGAAAAAGACTCAAAATGAAACTCGGGATCAGGCCAATCTGGATC
CTTCTTCCAATGATATGTTGAACAAGCATCGGAAAGTTGTCCTCTACATTGCCAAGCCCCAATGCAGCCTCGAGAGCGCCTTTCCCGCCAACTCGGAGAG
CTCCACGCCCACTTCCTCCACCGCGGCCACCCATTCCCGCCGGCGGCT