« Back to Oryza longistaminata search


Detailed information on CNT30107393


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691387Oryza longistaminataOryza sativa49.3214.498.98684forward
CNT30552698Oryza longistaminataOryza glaberrima50.1847.1598.13696forward
CNT30595715Oryza longistaminataOryza meridionalis49.4648.3497.67686forward
CNT30100463Oryza longistaminataOryza rufipogon48.8862.6698.97678forward
CNT30575449Oryza longistaminataOryza barthii43.8452.698.85608forward
CNT30603702Oryza longistaminataOryza punctata70.5874.990.6979forward

Expression of CNT30107393

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MRLNNICLLLEGKRCMTVLKQMKNSSFYEVNFCC*

>peptide 2 (50 aa)
MEAGTCFDNVDIILMVLLNLLINKNIFISMDASATRQWQMNSSTYEHLAR*

>peptide 3 (75 aa)
MKIVPSVLIMKAAHENCLVHPDHLLLFPLIRLRRLYIVYWLPLLNVSLITHDMLAWKGSFELIMRFAGNFSRNVQ*

>peptide 4 (89 aa)
SPPPFEPPSPAPPRATARRSRTDLVNSSSLTTLPAPAPATTQIAMPFSASSRRPLPSTVPLRRARGFSDSCKGTVTSLWQQLHILQENL*

Sequence

>CNT30107393
CTCTCCTCCCCCTTTTGAGCCGCCATCGCCGGCACCGCCGCGCGCGACGGCGCGGCGCAGCCGCACCGATCTCGTGAATTCCTCCTCCCTGACCACTCTC
CCGGCCCCGGCCCCGGCCACCACCCAAATCGCAATGCCTTTCTCCGCTAGCTCCCGCCGTCCCCTCCCCTCGACGGTGCCGTTGCGGCGCGCGCGTGGTT
TCTCAGATTCATGCAAGGGGACGGTGACAAGCTTGTGGCAGCAACTGCACATCTTGCAAGAAAATCTTTAGGGTTTTTCAGACCATACCGATGATTTTCT
TGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAAAACTATCAAGTGAGAAAGCAGGGTAGAGTTATTCAATTACAGGCACACAAGA
CAAAATTAAAGTAATAAACATGTCTGACCAACAAACACAATGATTAATAACAAAACTCTTGTGGCATGAGATAATATTGAAGCATGATGCTTACAACAGT
TATAATATGAAAACTAGATGGAGGCAGGTACATGTTTTGACAATGTTGACATTATCTTAATGGTTCTTCTAAATCTTTTGATTAACAAAAATATATTTAT
TTCCATGGATGCTAGTGCCACCAGGCAATGGCAAATGAACTCATCAACATATGAACATCTAGCAAGGTGAGTAAAGTCTGGTAAGGAAGTCAAACATCTA
ATATGTATGAAAATTGTTCCTAGTGTTCTTATAATGAAGGCTGCACATGAAAACTGTTTAGTCCACCCTGATCATCTATTGTTGTTTCCTCTGATCAGAT
TACGTCGTCTCTACATTGTGTATTGGCTTCCACTGCTGAATGTTTCTCTTATTACCCATGACATGCTTGCTTGGAAGGGCAGTTTTGAGTTGATCATGAG
GTTTGCAGGAAATTTCTCTAGGAATGTCCAGTGAGTGATCCTGTAAATTTTGGAGTTGATTGTTCATCAGAATAGCACTATAATTTTCCTGTCATCTGTG
CTTTGGTAGCGGAACGTTCATTGTCCCATGCTACTCAGCTTTGTACTTTTGTAAATCAAATGAGACTGAATAATATATGTTTACTTTTGGAAGGAAAAAG
ATGTATGACTGTTCTCAAGCAAATGAAAAATTCCAGCTTTTATGAAGTTAATTTCTGCTGTTAACATGCTACCTAGTGCATTCCTAGAATCCTAGTTAAT
GTCTTAAACCTTGGTTGATGAGCGTTCCAAGCTGCTTATCCCTATTCAGCAGAATGCAAGGTTTGTAGGGATTACTATTTGAGAAAGGAAAACCAGTGCC
TAGGTGCTTTCCTGAGCATGTAGGTTACTATTGTACCACCTCTGTCCCAAAATATAACCTGGATATATTTCTTTCTGTAGTACTCCC