Detailed information on CNT30107368


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005971, E-value = 5e-70

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697180Oryza longistaminataOryza sativa21.5826.2195.47243forward

Expression of CNT30107368

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MKLGLGSSITPLRIQLLELNLEVRAVPNRTLGPICLLRHGLCNLTGSR*

>peptide 2 (55 aa)
MQDCKYLVPKVKNTAIVVLLLEIQRKLKLQICSYYNLANRTTIARVPINQIATNM*

>peptide 3 (30 aa)
MYCPLFAPSIIVHKSALNQSICLDYGIATL*

>peptide 4 (45 aa)
MRNLGSVWHSSSSSSSSTPPGARAQPNSFSSTKTGSGVGWSSLTK*

>peptide 5 (39 aa)
MHLVYPVELNERMIAISMECRMLEAQGMISHCYLYFTSG*

Sequence

>CNT30107368
TACTGAAGTGTCCAGTGTTTCCAGGACATGCTTAATTCGAAATAAACAGGACAAATCAGGGATCTTGAAGCGCATCAGGTAGCTTAGCTTGGTCTGAACT
TCACCAGAATGTAGAAGAGATTATGCAGGATTGCAAATATCTTGTACCTAAGGTGAAGAATACAGCAATCGTTGTGCTCTTGTTGGAAATACAAAGAAAA
TTGAAGCTCCAAATATGTTCTTACTATAATCTTGCTAATCGTACTACCATTGCAAGAGTACCAATCAATCAGATCGCCACAAACATGTGACCTTGGATTC
CACATGCCATTTTCACTATGGATGGCATATTTCGATTTACAATCTATTTGCGGTGGCACTGATCTCGGTTTGTCTTGGAAGAACTAGTGACAAAAATGTG
CCAGTATGTGTGCTACCAGCTAAATGTGCCCCTTCAGCTGTTCTTCATCTGCTAAAGCATCTTGTATCCAGTAAATATGTTGGCAGAACTAGGATTAATT
TTGAAGAGTGGCCTAATCTGAAACGTGCTCCATCTTGTGTTCATTTGTTGCCTGGTATGCATCTTGTCTATCCTGTGGAACTCAATGAGAGGATGATAGC
AATCTCAATGGAGTGTAGAATGTTGGAAGCTCAAGGTATGATTTCTCACTGTTATTTATACTTCACCTCTGGCTAATACATGAGAAATTTAGGGTCTGTT
TGGCACAGCTCCAGCTCTAGCTCTAGTTCCACCCCTCCTGGAGCTAGAGCTCAGCCAAATAGTTTCAGCTCCACCAAAACTGGGAGTGGAGTTGGGTGGA
GTTCTCTCACAAAATGAGCTAGAGTTATGAAGCTGGGTTTAGGCAGCTCCATAACTCCACTCCGGATTCAACTCCTGGAGCTAAATTTAGAAGTTAGAGC
TGTACCAAACAGGACTTTAGGACCCATTTGCTTGCTGCGCCATGGCCTATGTAATCTTACTGGGAGTAGGTAGGAGCAATTACTATTGACTTGTTATAAA
TGGCCTCAGGGGTTCATGATACATGTACTGTCCATTGTTTGCTCCAAGTATTATTGTTCACAAGAGTGCTCTAAACCAATCCATCTGTCTTGATTATGGA
ATAGCCACACTATAACATGAAACCAG