Detailed information on CNT30107118


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30117429Oryza longistaminataOryza nivara5530.1599.39495forward

Expression of CNT30107118

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MNAILASIAQVDSGDILEKKKSIVVMRKAQEEDKRTGEAAS*

>peptide 2 (29 aa)
MCMHSCWLKEIIQGDMMPKQEDRGQGCPR*

>peptide 3 (69 aa)
TEREQQQLWDPCVYLFIDGFISPCICELWRLQQLWEENECMLLLEETVVLMIARMNGCESETEEISGNG*

>peptide 4 (43 aa)
QSESNSNFGIHVCICLLMDLSLPVYVSFGVYSNYGRKMNVCCY*

>peptide 5 (69 aa)
MIYWMYLSICAYSFPPSNRTCTTHFLVFLSQISLNLIKFIKEKRSNIFSTKQTYYENVLYLFHVRFNKIN

Sequence

>CNT30107118
GACAGAGCGAGAGCAACAGCAACTTTGGGATCCATGTGTGTATCTGTTTATTGATGGATTTATCTCTCCCTGTATATGTGAGCTTTGGCGTCTACAGCAA
CTATGGGAGGAAAATGAATGTATGCTGTTACTAGAAGAAACAGTAGTACTAATGATAGCGAGGATGAACGGATGTGAAAGTGAAACGGAGGAGATCTCAG
GGAATGGCTGAAGTTGCATTGGACGAATCTTGGTCCGACAAGCCTCCAAGACAAACTTGGATTCAATTTCGTTCTGGCAGATCGGTATGAATGCCATCCT
CGCAAGCATTGCGCAAGTTGATAGTGGTGATATTCTTGAAAAGAAAAAATCGATAGTGGTGATGAGAAAAGCACAGGAGGAGGACAAGAGGACAGGTGAG
GCGGCAAGCTAAGAAGACGGTGGCTTGGCGTGCTTGGCGTAATCTAACTTGATTACCAGGCAGAGGCAGGCAAACACAGCTGGATTCTAGCTCGATGGAA
GATGTTCCTGCCACATGTGCATGCATTCATGCTGGCTTAAGGAAATTATTCAGGGAGACATGATGCCCAAGCAAGAAGATCGAGGGCAGGGCTGCCCCAG
ATGAGATCATCAGCCGCAGCTACACCTCTACCTCTGCTTCTTGTTTTCCTCTACCTGTAGGCTGTAGCAACAACAATTGCTGATCTGTGATGATCTATTG
GATGTATCTCAGTATCTGTGCTTATAGCTTTCCACCATCGAATCGAACATGCACGACTCATTTTCTGGTATTTCTCAGTCAAATTTCTTTAAATTTGATC
AAATTTATAAAAGAAAAACGTAGCAATATTTTCAGTACAAAACAAACATACTATGAGAATGTATTATATTTATTTCATGTTAGATTTAATAAAATTAATT