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Detailed information on CNT30106956


BLAST search results

BLAST vs Swiss-Prot:
sp|P12940|IBB_HORVU, E-value = 1e-27

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552364Oryza longistaminataOryza glaberrima86.4782.192.18601forward
CNT3099992Oryza longistaminataOryza rufipogon47.1978.4792.07328forward
CNT30575072Oryza longistaminataOryza barthii9.6426.6991.0467forward

Expression of CNT30106956

Peptides detected in this lncRNA

>peptide 1 (28 aa)
MDPAPPGTPRTGRRTCWAPARRCSARTAG

>peptide 2 (33 aa)
MSGPGNGPGASWHTSHWATHLLGSSSSLQRQNGG

>peptide 3 (30 aa)
MLALHKYFIFPLGPHKRTGTNTPTHMEQTN*

>peptide 4 (34 aa)
MQRQVGGFILLQKALSQHFPHGRGVQKGPGSAPQ*

>peptide 5 (71 aa)
FLIILYVARSSLIYDIETTQRGSCLHCINILFSLLVHTSEQGQTHPHTWSKQTNKACKMHKLQSTENSGWS*

Sequence

>CNT30106956
TTTCTGATCATTTTATATGTCGCTCGTTCATCTCTTATTTATGATATTGAGACAACTCAACGTGGGTCATGCTTGCATTGCATAAATATTTTATTTTCCC
TCTTGGTCCACACAAGCGAACAGGGACAAACACACCCACACACATGGAGCAAACAAACTAACAAAGCATGCAAGATGCACAAGCTGCAGAGCACTGAAAA
TTCTGGATGGAGCTAGATAGCTGTAGCCTCTAGCTATACCAACTCTGAATGATCGAACGAACGATCAGCTAGCTGCAAGCTAGGGCCGGCGAGTTTTATT
GACGGACACACAGATCGATCATCGATCATCTGTAGCTAGCTAGTTCTCCTCTTGGGGTTTGCACACGGGGCCGGGCTGGCCGGTGAAGTGGTCCTTGCAG
ATGTAGCGAGGCGGCTCCGACGACTCCACGCGCTGGCAATCCTTGCACGCGTCGGCGCACTTGTTCACCTCGTCCATGCAGCGGCAGGTCGGCGGGTTCA
TCTTGTTGCAGAAGGCCTTGTCGCAGCATTTCCCCCATGGCCGCGGCGTGCAGAAGGGGCCCGGATCGGCGCCCCAGTAGACGTCGCTGCAGATGAGCGG
CCCCGGGAATGGACCCGGCGCCTCCTGGCACACCTCGCACTGGGCGACGCACTTGCTGGGCTCCAGCTCGTCGTTGCAGCGCCAGAACGGCGGGG