Detailed information on CNT30106686


BLAST search results

BLAST vs Swiss-Prot:
sp|Q00451|PRF1_SOLLC, E-value = 3e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692721Oryza longistaminataOryza sativa40.441.4898.16326forward

Expression of CNT30106686

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MATGRTRLTPSALALMAVQRQSAASRSATPDSSGQQVSPALAPTTACTSPFSASTHASSFSVSTGHFPVGVDGVGVAGVGVY

>peptide 2 (43 aa)
MHDTAKYMLHKYYYTSIKCTIQVSTRASMTQVRAHVYMLHVTI*

>peptide 3 (36 aa)
MHNPSLHACLHDTSQSSCIYATCHYLIMQVICNLIA*

>peptide 4 (40 aa)
MIHTHQTLYFIAYISHTLYFIINLPNHYKPNTTNSTCIYA*

>peptide 5 (31 aa)
MHICMTQQNICYTNIIIHQLNAQSKSPRVPP*

Sequence

>CNT30106686
GCTTTTAATTATGCACGCATTTTTAAGAATGGCTGAAACAAACACATGAGAAATAGGAAAAATATTCATTTAAGCACAACATAACACGTTTTATACTATA
TAGGAAAGTTGACAGGCTTTGTCAACCACACATACATATGATACATACACATCAAACTTTGTATTTCATAGCATACATATCACACACTCTTTATTTCATA
ATAAATCTCCCAAACCACTACAAACCAAATACCACAAACTCCACATGCATATATGCATGACACAGCAAAATATATGTTACACAAATATTATTATACATCA
ATTAAATGCACAATCCAAGTCTCCACGCGTGCCTCCATGACACAAGTCAGAGCTCATGTATATATGCTACATGTCACTATTTAATTATGCAGGTAATATG
TAATTTGATAGCTTAATTAATTAATCCATGCATGCATGCAGAGATGAGATGCAGTAGGTGATTATTATTTAATTAGTGATCATACATAATTGAGGTGATT
TATGATGGGCACTGGAAGCTGGAGGGGACGTGCTTGCCGCACTCGTTGACGAGCACGGAGATGGCGACGGGGAGGACGAGGCTGACGCCGAGCGCCTTGG
CCTTGATGGCGGTGCAGAGGCAGAGCGCGGCGTCGAGGTCGGCGACGCCGGACAGCAGCGGGCAGCAGGTGTCGCCGGCGTTGGCGCCCACCACCGCGTG
CACCAGCCCGTTCAGCGCGTCCACGCACGCCAGCAGCTTCAGCGTGTCCACCGGGCACTTCCCCGTCGGCGTCGACGGCGTCGGCGTCGCCGGCGTGGGG
GTGTACG