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Detailed information on CNT30106621


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005530, E-value = 8e-57

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696870Oryza longistaminataOryza sativa88.4228.8898.871244forward
CNT30104290Oryza longistaminataOryza rufipogon90.7663.6698.671277forward

Expression of CNT30106621

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MDRRCAALGILMTTNRRRYRRTFGTARVL*

>peptide 2 (66 aa)
MFLATSSSGQSESSIRTFRPFRFVTLENATALYGGASSSCSFSQKLLLLEAAPNSPQLLRICSYRF*

Sequence

>CNT30106621
CATGTCAGTACCCTGACATGTGTGCACTTGTGTTGTGTGGTGTCTGAAGTGGTGTGCTTTTTCTAATTTGAGATTTTTTTGTTATATTCGTATTTATTAT
TAGTAGAGCATCGCAGAATTGAATGGTTTAAAGCAGCTCCCATCTTCTTTTCCCCACTTCCTTGCTTCCTGATTTTTTCCCCTCACTCTCTTATCTCATC
TTTTCCCTACTTGCTTGCTTCCTGAAATTTTCCTTTTCCCTCTCTCCTTCCTGCGTCGCCGCCGGTCACCTGAGTCGCCTCGGTGTACTTCCCTTCCAGC
TTATTGTGGGGAAACCTTGAAGGGCTCCCTGGGGTCAGATCCGTTTGCTCATGGATCGGAGGTGTGCGGCACTGGGGATATTGATGACGACGAACCGTCG
TCGGTATCGGAGGACCTTCGGCACAGCAAGGGTCCTTTGAAGAAGCATCTCGTTTGCTGTCCATGATTGGAGCAGTGGCTCATGGTTTCAGCAGTGTGAA
GCTGGCAGTCTTCCGTTGGGGATATCATTAGGATTGATTCATTTGTCTCTTTTATTGAAGGAAAAGTGTACTGCTCTTTGACGCACTCCATCAAAAATAT
TTTACATCAAGAAGTTTATCTTCTCAATCTTTGCTGGGGGAAACATTTGAAGATATATGGCTATTTGAGATTTTTGCTAATTGATTTTTTATGCTTCAAA
TATTTTTATTGGTTGACTGAGATGAATTTTTATTAGATTAGTAGATATATATGGATATTAAAAATATACTATTTCAGAACAGTATCAAGACAAATAGAAC
ATTTCCTTAAATAAATTGATATTAGATAATGTGAACCTACCAGCACCCTATCTTAAGCTCGATATACCTTTGAGAGGACTTTCTTATCAAATGGGTCTTA
TTGAATAACATTTGTGCATCTATAAACTTGAATAACACTGGTACAATTAGAGGATTTTAAATACTGTGGGTATATGTCAGAGGACTTTTTACATAGACTG
TCTTTCGAGCTCACCGTTTCTGCTTGCAGTAAACCTTAAAAATATTAAGTCAATTAGAAAATCTCCTTGTATACAATGTTTCTAGCGACATCTTCTTCAG
GACAATCTGAATCATCAATCAGAACCTTCAGGCCATTTCGGTTTGTGACTCTAGAGAATGCTACGGCCCTGTATGGGGGAGCTTCTTCCAGCTGCAGCTT
TTCCCAAAAGCTGCTTCTGCTAGAAGCTGCCCCAAACAGTCCACAGCTTCTGAGAATCTGCAGTTATAGATTCTGAAAAATGAACTAAGAAGCCAGAAGC
TGGGTTTCAGAGCTTTTCCAGATTCTCAAAAGCTGGCTACCAAACAGCTGCTTCTCAGAATCTAAAGCTCCCCCAAACAGGCCCCCATGGCAGAAGACTT
GTTTAGG