Detailed information on CNT30106486


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695623Oryza longistaminataOryza sativa100.6741.3496.081046forward
CNT30103018Oryza longistaminataOryza rufipogon89.1277.7596.33926forward
CNT30577336Oryza longistaminataOryza barthii100.1947.3696.351041forward

Expression of CNT30106486

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MGLMSLPRKRTRAVPLLGQATVDFTSMMCSYLVRSSCSITLLACLLHSQHSASAAISR*

>peptide 2 (68 aa)
MDFMFANQVCVIVQVACLAHLVYHVLAIGSKLIARACSLNLDPDPDHGIDELATKENKSCAFARPSNS*

>peptide 3 (43 aa)
FFFLFSLKLEEEKVCYNGVDPVSFISIYNGRRRRSRGNGISTL*

>peptide 4 (45 aa)
MEIANQLVLVPCVLLHLIAEQFINNYLVIWGAKDLVPVPVSCEYW*

>peptide 5 (33 aa)
MFQLLAAGISMAAYSITEPCHTCMLQHPFNGDC*

>peptide 6 (36 aa)
MVSTRLALSLYITEEEEEAEAMASLLCRQHWNLNYI*

>peptide 7 (32 aa)
MIPRAVQISXXXXHCHVPVIGSRNQHGSLLYY*

Sequence

>CNT30106486
CTTTTTTTTTCCTCTTCTCTCTGAAGTTGGAAGAGGAGAAGGTATGCTACAATGGTGTCGACCCGGTTAGCTTTATCTCTATATATAACGGAAGAAGAAG
AAGAAGCAGAGGCAATGGCATCTCTACTCTGTAGACAGCATTGGAATCTCAATTACATTTAAGTAATGTGCTGCTGCAACGGATGCCACCCATCTCCTCG
ACAAGCTGATGGATTTTATGTTTGCTAATCAAGTGTGTGTAATAGTGCAAGTGGCATGTCTAGCTCATCTTGTCTATCATGTCCTGGCTATTGGCAGCAA
ACTCATTGCACGAGCATGTAGTTTAAATTTAGATCCAGATCCAGATCATGGGATTGATGAGCTTGCCACGAAAGAGAACAAGAGCTGTGCCTTTGCTCGG
CCAAGCAACAGTTGACTTCACCTCCATGATGTGTTCTTATCTGGTACGTTCTTCGTGCAGCATCACATTGCTGGCCTGCCTTCTGCACTCACAGCATTCA
GCATCTGCTGCAATCTCAAGATGATTCCACGTGCTGTCCAAATTTCTTANNNNNNNNNNCATTGTCATGTTCCAGTTATTGGCAGCAGGAATCAGCATGG
CAGCTTACTCTATTACTGAGCCTTGTCATACGTGTATGCTCCAGCACCCATTTAATGGAGATTGCTAATCAACTAGTATTGGTGCCATGTGTGCTATTGC
ATCTGATTGCTGAGCAATTTATCAACAACTATTTAGTTATATGGGGAGCAAAGGATCTTGTGCCTGTTCCTGTCTCATGTGAATACTGGTGACATGGCCA
TCCCATGGCTTTACGAAGGCAAGGTGAAGCGCTCCAAATGTCCGGTGATTGTTTGAGAGCAGTATGCGTCAAGTGAAGGGGGAAATTAGAGGCAAAAGAG
TGAAATATTCATTGAATGAGCTCCTGTACATTTCCTCATGTATGATGTAGGTGAACATACAAAATTGTTTTGGTGATCAGCAAATCCTCTAATAGGCGGA
CGCCAATCACAAGTGCCAGAGTTGGGAATGTTCCATCAT