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Detailed information on CNT30106308


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30689984Oryza longistaminataOryza sativa60.5344.9897.16457forward
CNT30574687Oryza longistaminataOryza barthii96.6989.2494.38730forward

Expression of CNT30106308

Peptides detected in this lncRNA

>peptide 1 (32 aa)
METFGWAGGGQLMHHDDVYLPRSVGCGRPFELD

>peptide 2 (53 aa)
LSRSFSRGRGRERERQLLALYILTQLTGVGEAMNMRTIISLIPDTSSVLSPPL*

>peptide 3 (94 aa)
LSLFLKREGERERETVTSSIYSHTAHRCRRSHEHEDHHIPHPRYIICTVSSSLASLLSLLCPLLVAWSIRAKQQASFLGARPAPGWDKNHRNHS*

Sequence

>CNT30106308
CTCTCTCGCTCTTTCTCAAGAGGGAGGGGGAGAGAGAGAGAGAGACAGTTACTAGCTCTATATATTCTCACACAGCTCACAGGTGTAGGAGAAGCCATGA
ACATGAGGACCATCATATCCCTCATCCCAGATACATCATCTGTACTGTCTCCTCCTCTCTAGCTTCTCTCCTCTCCCTGCTGTGCCCCCTGCTTGTTGCT
TGGTCAATTAGAGCTAAGCAGCAAGCTAGCTTCCTGGGAGCAAGGCCGGCGCCTGGCTGGGACAAGAACCACAGGAACCACAGCTGACTGATTGATCAAT
CAATCAATCTTCTGCTGCCCTGCTGCCTCACAGCCTCAGCAAGACAGTACGTACAGATCAATTTTGACCCTCTTGAGGCTCCGGCCGGTCGCCGACTCGC
CGTCGTCGAAGGTGCTCTCCGGCCGGCGGAGTTAACATTGAGCTTGATTTCAAGCCGCGCTCAGATCCGACCGGCAAATCGCCGAATTGAAGCTGCCTTC
CGTTGTTTCACTCTGGTCTCTGGGGGCTCGCCATCAGCCATCCGTACCGAGAGCTGTAGTGTGCGCGGTTTTGTCGCGTCGTCGTACGTCGTCCCAGAAT
CAGTGAGCCAGACAGACGAGCCAGTGGTTTGGTGATTCTTGCGGCGGCGCGGGCGATGGAGACCTTCGGCTGGGCCGGCGGCGGGCAGCTGATGCACCAC
GACGACGTCTACTTGCCGCGCTCGGTGGGGTGCGGGCGGCCGTTCGAGCTGGACG