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Detailed information on CNT30105476


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005296, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553765Oryza longistaminataOryza glaberrima26.6742.9995.34558forward
CNT30101918Oryza longistaminataOryza rufipogon26.5363.0795.68555forward
CNT30576457Oryza longistaminataOryza barthii26.6727.7694.8558forward

Expression of CNT30105476

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MGTQETLCFCLECDYCLIYCRAELHELEASSVSCFT*

>peptide 2 (61 aa)
LCLALHARPPIVVSSLHLSSSSIGGVRLPPSQLRFQMSPRRRSREKLTVRVCHDRLFCPAI*

>peptide 3 (58 aa)
MMNPLLLAKINPLDHSSVEVNDVLLICDTRHLEQPFHIQIWDNLQLQSSDFMPLRRNV*

>peptide 4 (52 aa)
LPRSARTATHRRLQSPPLFFLHWWCTLASVSASFSDVSSSSKPGEINRACLP*

>peptide 5 (46 aa)
FASLCTHGHPSSSPVSTSLLPPLVVYACLRLSFVFRCLLVVEAGRN*

>peptide 6 (42 aa)
MRFSLIVLVGILDQEKRRAFGFGPRLEDREFVRTDCESVSRS*

>peptide 7 (72 aa)
MNLKQVQFPVLPEKKRFIFLSEDQFHYHSKWSCSSIFFYHLCPLLRKESSPFLVLKSSPNGYNFLRPQMTKQ*

Sequence

>CNT30105476
CTTTGCCTCGCTCTGCACGCACGGCCACCCATCGTCGTCTCCAGTCTCCACCTCTCTTCTTCCTCCATTGGTGGTGTACGCTTGCCTCCGTCTCAGCTTC
GTTTTCAGATGTCTCCTCGTCGTCGAAGCCGGGAGAAATTAACCGTGCGTGTTTGCCATGATCGATTGTTTTGTCCAGCAATTTGAGCGGACAGTAAAGA
AGTACTAAGCCATGTCAGAGTGTGTTCTGAACTTCTTTGTTGGAAGAGCAGCGAGGTGCTGTGGATGAGGAGCGATTTTAATGATGAATCCATTATTGTT
GGCTAAGATTAATCCACTCGACCACTCGAGTGTGGAAGTTAATGATGTCCTCTTAATCTGTGACACACGTCACCTGGAACAGCCTTTCCACATTCAAATT
TGGGACAATTTGCAACTTCAGAGTTCAGACTTCATGCCATTGAGGAGAAACGTGTAGAGGTCATGAGAGAATTATATAGAATCCGGCAGCAGTTTTTTGA
GTTGAAAAATTGAACTAGAAATTCCTGGAGAGGCCACCTTTTACGTGAGAGTGAGACACGGCGGCGGCGGCAAACCCCGGCAGGCCGGCAAAGCGGCAGC
GGCGGCGAGGTCACCTACACCGTCCGATCGGATACGCGCGGTTCAGATTGGGAACAGTTGAGATTTTAGAGGGAACCAGGTTTATTATTGATGGGAATAA
TCACATTTCATACTGATACAAAAGAATGGCGACAGCATAAGGCCGTGATACGGTAACAACATTTACACTCATACAGGTTGATGTGATGGGAAAAGTAGGA
AGTGTGAGAGATTAGTAAAATAGTACTGGAGATTGATTGGATGGATCAAGTGGCTTACTAGTACGTACTGACCTGGAGAAAGATTGTGCGTATTTAATTG
AAGGAAGAGGAGAAAGCTTGCATTTTTATGAGGTTTTCCTTGATCGTGTTGGTTGGAATACTTGATCAGGAGAAAAGGAGGGCATTTGGTTTTGGACCAC
GTTTGGAGGACAGGGAGTTTGTTCGAACAGATTGTGAGTCAGTATCAAGAAGTTAAAGAAGCTGGAGTAAACTAGTAGGATCTGGGAGGTTGCTCATTCC
AAAGTTCATTTTGTTTCGGCCCGGCGATAAAAAGTTCATTTTGTTTTGAGATGGGCACCCAAGAAACACTTTGTTTTTGTTTGGAATGTGATTACTGTTT
GATTTACTGTAGAGCTGAGTTGCATGAACTTGAAGCAAGTTCAGTTTCCTGTTTTACCTGAAAAGAAAAGGTTCATATTTTTATCTGAAGATCAGTTTCA
TTATCACTCCAAGTGGAGTTGTTCTTCGATTTTTTTTTATCACCTCTGTCCCCTGCTGAGAAAAGAAAGTTCACCTTTTTTAGTTCTCAAAAGCAGTCCA
AACGGATACAATTTTCTTCGTCCTCAGATGACAAAGCAATGACAAAGACCGGCCCTTTTTCACCTTCCACAGAAAATTAGCTAAAATATCCACAACATCT
TAGCCCACAGTAAATTCTAAGAAGTAATAAGTCAAGGAGTAACCATTAGAACATAATCACCGCACCGGTGAAAAAGATTGTCAATTCAAAAGATAAAAGG
GTCATTTTGAATTGATGCCAAAATATATGTTACCATTTTTTATTCTAAATAGTACTAAATGTAAATTACGTAATGGTTTGGCTTAGACCCAAGCGAATGA
TAATGCCTAATTTTCTTCACCGTAGCATAAAATTTGCCTTTTAATTAGTATCGATCCAAACGCACTCACTTAAAATTCTATCCTAACAAAATAGTATCAG
ATTTTAAGAGCAGGTTCAATAGCAGACTATTAGTCAGCTATAAATTCATAAAATATGAGAGAGTAGAGCAGTGTACTACAGATCTGTAGCCAGCTGCAGT
ATGGACTCCAAGAAGCAATACGTGCAATACGTGTATGATAGGTGAGATCATATATTAATAGTATAATAAACAACTATTGTATGAATTATTAGATCGGTTA
TAGATGAATTGGAGCTATTAGTGGGCCATACTATTAAACTTGCTCTAGACACTGCCAAATACAGTACATTGGTAGGACGCTGATCAAAGGAG