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Detailed information on CNT30105452


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30689968Oryza longistaminataOryza sativa81.58101.7294.47651forward
CNT3099914Oryza longistaminataOryza rufipogon87.2254.6394.97696forward

Expression of CNT30105452

Peptides detected in this lncRNA

>peptide 1 (46 aa)
AGPIKVSPKYFFFFFFALRLPLGLLSSHRSAAAGDGEDNISIAISP*

>peptide 2 (36 aa)
MDGRSHVSSSADLAGLCRATHCPTISWLTCYDYTYQ*

Sequence

>CNT30105452
GGCCGGCCCTATTAAGGTGTCTCCTAAGTACTTTTTTTTTTTTTTTTTTGCCCTTCGTTTACCTCTAGGGCTCCTGTCCTCTCACCGCTCGGCCGCCGCC
GGCGACGGCGAAGACAACATCTCCATCGCCATCTCGCCATAATAATCCATGGCTTTTCCTCTGGCCCGTTAGCCCTAGCCACATTACGTCGTTTGGGGAT
TGGGAATTGGGAATTGGGAATCGGGAGAGATTCAGAGATGGGAGATCACCTGGGGCATGCCAGATCGATGTGACGCCGCCGAGCGCCGGCGGCGAGCGGA
GCGGCAGGGGGCGAGGATTGGCGCTGCGTTCTCCCCTCCCTGAATTCTTCCGCCCCGTTTCTGGATTTCTCGGTCGCAATCCAGGCTCAGGCTCAGCAGC
AGAAGCAGCAGCAGTAGTACCCCATCATCATCCATGGTGAGAGATGAGAGATGGATGGTCGCTCACATGTGAGCAGTAGTGCCGATCTTGCCGGACTCTG
CAGGGCCACCCACTGCCCAACCATTTCTTGGCTAACTTGCTACGACTACACATACCAATAGCAATGACATGCATGCAAGCCAAACATAAACTGCTCCAAT
ATCTCTATCTTCTTCTTTAGTTTCTGAAAATGCACATTGACATCATTTCCTCTTCAATGGAGTAGATAAACTACATAAGCTATGTTTGAGGGAGAAATTT
AAGTGTGACACATAAATGGGGGGCTACTGCTAATATAACTATACTCTTTCCATCCAAAACATGATAAATAGTAGTATAAGCATTTCTTGGCCACTGAT