Detailed information on CNT30105326


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000920, E-value = 1e-147

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694227Oryza longistaminataOryza sativa50.0576.9797.562209forward
CNT30102228Oryza longistaminataOryza rufipogon78.3684.1297.693459reverse complement
CNT30576862Oryza longistaminataOryza barthii30.1560.896.471331forward
CNT30116895Oryza longistaminataOryza nivara79.6187.9697.813514forward

Expression of CNT30105326

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MPNDLQRAAKSSQPFKKLKITTWHFLTFKVVFESPEDEGCV*

>peptide 2 (56 aa)
MLNAFYPVIIMMYLRIQMVGTSNLRESFLFEVCQENRTMRCVCIISVNTNTENKRN*

>peptide 3 (59 aa)
TDSQSWTWKPRVCLXXXXRVCLFLDGRSTMQQYSRIVDQMSAIVDQMSDALLPINTEGI*

>peptide 4 (53 aa)
MGIRTLRPLGGLIIGKLSDGIRLVYKHTSTQHTVRHRGREGRRTMRRDGGGDD*

>peptide 5 (55 aa)
MPLDWVTTTFKGKFSGINESKNVFYESEKISSIQLLASQQTEKYQTWIYTDTIQP*

>peptide 6 (49 aa)
MSTPPNLKSVAKKTKSKGNPWRGGSDLTLADPPSPYRKPRHRLPAAPTVP

>peptide 7 (52 aa)
MVENKGNVLEWLRLTTVNSKQLQMPLVLATCNYSLRPCVHEQMSRIIHYSMY*

>peptide 8 (45 aa)
MHPLEISIENSNGWYLQWVNPFCSKSSQENKMMQRVCANSVEYRK*

>peptide 9 (48 aa)
MVENKENVLEWLRLTQTVNSQQLQMPTVLATCTYYLRPSVHEQMSRII*

>peptide 10 (39 aa)
MGKSSKLPSRDMLANLPEHCKMSVVGEDNTNNTKGNKLR*

>peptide 11 (61 aa)
MKSRAIRLIYKARQITITSQILHWQILHWQIVHCQNHNAGCWEKTTTIKQNKKKCAGKGRR*

>peptide 12 (32 aa)
MAQINLNGNSNSSECPWFRQHVSTPSVHFVHE*

>peptide 13 (32 aa)
MPLLQISTLHLLTFSRYMQNGMTLSMRKSITR*

>peptide 14 (37 aa)
DGQSKLDMETQGLPFXXXXGLPFFRRKEYNAAVQQNS*

>peptide 15 (34 aa)
MSCSKICLEHITKEPRRCQMISNGQQNHHSHSRN*

>peptide 16 (29 aa)
MLISAKVDRHRPLCSLRIIRSTCHKYSTC*

>peptide 17 (31 aa)
MAQVNPNCQFPTVTDAHGSGNMYILPPSLST*

>peptide 18 (29 aa)
MARRLRSHLGRPALPLPEAAASPPRRPHGP

Sequence

>CNT30105326
GACGGACAGTCAAAGTTGGACATGGAAACCCAGGGTTTGCCTTTTNNNNNNNNNNAGGGTTTGCCTTTTTTTAGACGGAAGGAGTACAATGCAGCAGTAC
AGCAGAATAGTTGATCAAATGAGTGCAATAGTGGATCAAATGAGTGATGCACTTTTACCGATAAACACTGAAGGAATATGATAGCGATAAGATAACAGAT
CCACTATATAGTATCACCCCATGTAAGAGTTAAAACCCAACTATAATCAGTTCCACAGTAAACTCCAACAAGTGCATGGATTTAGCAGCAAAGATCAAAT
AGGCCTTTCACTCTTTAAGGCAAATATGAAGAGTAGAGCTATCAGATTAATATACAAGGCACGTCAGATCACTATTACATCACAAATATTGCATTGGCAA
ATATTGCATTGGCAAATAGTTCACTGCCAAAACCATAATGCCGGTTGTTGGGAGAAGACAACAACAATAAAACAGAACAAGAAAAAATGTGCTGGTAAAG
GCCGAAGATAAATAATACACAAAAGGAAGGCTTATTTTGTTCTTTGGAACTATGTATATACAAGATGGTGGCCTTGTTTGTAACCTAAGTAGGGAAATCA
GCACAGACATGTGACAATGCTCAACGCATTTTATCCCGTGATAATTATGATGTATTTGAGGATTCAGATGGTTGGTACCTCCAATTTGCGTGAATCCTTT
CTGTTCGAAGTCTGCCAGGAAAACAGAACAATGCGATGTGTATGTATAATAAGTGTCAATACAAATACAGAGAATAAAAGAAACTAAAACTTGCAAACTA
TCAAAATAAGAGGGCAGATTTTTGCCTTTCGCCACGAACTTGTTACATCATCTCATACATGCCACTTGATTGGGTCACCACAACATTTAAGGGCAAATTC
AGTGGCATAAATGAAAGTAAAAATGTGTTTTATGAATCCGAAAAAATCAGTTCTATACAATTATTAGCTTCTCAGCAAACAGAAAAATACCAGACATGGA
TCTATACAGATACAATACAACCATAAGAAACTAAGGACTGTTTTGGGCAAAACATGGTTGAAAACAAAGAAAATGTACTAGAATGGCTCAGGTTAACCCA
AACTGTCAATTCCCAACAGTTACAGATGCCCACGGTTCTGGCAACATGTACATACTACCTCCGTCCCTCAGTACATGAACAAATGAGTAGAATCATTTAA
CATGTACTAACAAGAAATAGCTGCAACTGGTAACTTGCTGGGGAGCAAGGCCTCCTAGTATGACAGCCGATTGAACATATTACCAAGGAACCAAGGAGAT
GCCAAATGATCTCCAAGGGGCAGTCAAATCATCACAGCCACCAATTCCAAATGCCCGTGTGGTTACAACCGTAAGAAACTAAGGACTGTTTTGAGTAAAA
CATGGTTGAAAACAAAGGAAATGTACTTGAATGGCTCAGATTAACAACTGTCAATTCCAAACAGTTACAAATGCCCTTGGTTCTGGCAACATGTAACTAC
TCCCTCCGTCCCTGTGTACATGAACAAATGAGTAGAATCATTCATTATAGCATGTACTGAGAAGAAATAGCTGCAACTGGTAACTTGCTGGGGAGCAAGG
CCTCCTAGCATGATAGCTAATTGAACATATTACCAAGGAACCGAGAAGATGCCAAATGATCTCCAATGGGCAACCAAATCATCATAGCCATTCAAGAAAT
AAAAAATAACAAACAATGAAATATGCATCAACAGAAGTATGCTGTGAAAGTATGAAACAACAAAAAGAAAGATCACGCTAAAGCTAACTGAATAAACAGT
TAACATTCCTTTATTAGTGTTACATTACTTAATTTTAGAAAAAAGAAACAATTAAGCTCCTATGAGCAAGTATTGTCATCACCGTGCAGTAAGCAAGTTA
GACTACAAGTATTGCCCATGATGGTACCATAACATCCCCCCATTTATGATTTATTCATTCTGGGAAGACTTCTTGCTCATTAAAGTGCCTGCTGGTAAAA
AAGTAAGAACTAAAATACCATTGAGCTGATTACCAACAGGATATTGCAATGGGTAAAAGTAGCAAACTGCCATCGCGAGACATGCTTGCTAATTTGCCAG
AGCACTGTAAAATGTCGGTTGTGGGAGAAGATAACACGAATAACACAAAAGGAAATAAGTTGCGCTGAAGTGCTGATAAAGACTGAAGATAAATAATACA
CAAAGACGACTATTTTTTGGTCGGTAGGGATATCAGCACAGGCATGTGACAATGCTCAATGCACCCGTTGGAAATTAGTATTGAGAATTCAAACGGTTGG
TACCTCCAATGGGTGAATCCTTTCTGCTCTAAATCTAGCCAGGAAAACAAAATGATGCAACGCGTTTGTGCAAATTCCGTGGAATACAGAAAATAAAATA
AATTTACAAACTCAAATATCAAAACAAGAGGGGAGATTTTTTGCCTATCGCCACTGGATAAGATCAAGGCAACGTGCAAGTGCGAATTTAGTGGCATACA
TGAAAGGCAAAATGAGATTTATGAATCCAGACAACTCGGATCCATACAAGTACAACCAGGAAAACTAAAGACTGCTTTTGGGTAAAATAATGATTGAAAA
GAAAAGAAATATATTTGAATGGCTCAGATTAACCTAAATGGCAATTCCAACAGTTCTGAATGCCCGTGGTTCCGGCAACATGTAAGTACTCCCTCCGTCC
ACTTTGTACATGAATAAAATGATGAGTAGAATCATTCGTTATAGCATGTACTGAGAAGAAATAGCTGCAACTGGTAACTTGCTGGGGAGCAAGGCCTCCT
AGTATCTCAGCTAATTGAACATAGGCATGTCCTGTAGCAAAATTTGCCTTGAACATATTACCAAGGAACCAAGAAGATGCCAAATGATCTCCAACGGGCA
GCAAAATCATCACAGCCATTCAAGAAATTAAAAATAACAACATGGCATTTTCTGACATTTAAGGTGGTGTTTGAATCTCCTGAAGATGAAGGCTGTGTTT
AGTTCACACTGAAATTTGAAAGTTTGGTTGAAATTGGAACGATGTGACTGAAAAGTTGTGTGTGTATGAAAGGTTTGATGTGATGGTAAGTTGGAAGTTT
GGAAAAAAACTTTGGAACTAAACAGGGCCGAAGATAAAGATAAAGTGTTTCACGCAAAACGAGGTGGTAATAAAGTGAAATACTATGCCACTGCTTCAGA
TATCAACGTTGCATTTGCTGACATTTAGTAGGTATATGCAGAATGGAATGACCCTTTCCATGCGAAAATCAATCACCAGATAGAACAAAACAGAAATATT
AGGCAAGGACCTAATATCAAATAATTATAAGGGGTGAGGCTTCGAACCCAGGTCGTCTAGCCCACCACCTTGTGGAGCTAGCCGGAAGACCCCTGGGCAT
TTCTCCGGATAGATAGAACTGAACCCCATAAAACCATTCGTCCGTATTACTCCAAATCCCGTTGCAAAGCACGGGCATAGCACTAGTGTATGAAAAGAAA
AGGAACTGTAGCCAATGCGAAGAATACAAATGCTTGAGGAATACAACTGCATCGAGCACGTTCATTGGGCTCAGCTTCGCCTTTGATCAATCAAATAATC
CTACCCCCACCATCCCTTATCACCAGACCTATCAGTTATAGCAGTAGTGGAGCTACCCTGGTTATCATTCGAAACGAATGACCATCCAAGGACAAAGCCA
CTGGCATTAGCACATGACTAGAAAGGCTCAAAGGGGGTAGAGGGAGGGTCCAATTTAATACCCACAGCAGCCTCAATTGCTTGAAGGCATGCTTATTTCA
GCCAAGGTCGATCGTCATCGCCCTCTGTGTTCATTACGGATCATACGTAGTACCTGCCACAAATACAGCACATGCTGATGCGATCACCAACACTAAGAGC
AAGTATAATAGTATAGCCAGATCTACAGCCTGATTTTCTTCTTCTTCTTCTTCTCTCTCTCTATCTTTCTCCCCTCCAATTGTACCTGCTCTAACGAGCC
AAGTCGGCTCAAGCTCACGACGACGACCAAAACCCCCAAGAGTCCACCCTAGGTTCCAATTGCCCTCACTGCACGGTGGCGGCGGCGGCAGCTACCCTTA
AAGATGGGAATCCGGACGCTGCGGCCTCTCGGCGGATTGATCATCGGCAAGCTGTCGGATGGAATTCGGTTAGTGTATAAACACACAAGCACACAACACA
CAGTGCGCCATAGAGGCCGTGAGGGGAGAAGGACGATGAGGAGAGATGGTGGCGGCGATGACTGATGAGTACTCCACCGAATCTCAAAAGCGTGGCTAAA
AAAACGAAATCGAAAGGAAATCCATGGCGAGGCGGCTCAGATCTCACCTTGGCCGACCCGCCCTCCCCTTACCGGAAGCCGCGGCATCGCCTCCCCGCCG
CCCCCACGGTCCCC