CANTATAdb - search

Detailed information on CNT30104644

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30161291	Oryza rufipogon	Pistacia vera	37.59	24.96	89.91	327	reverse complement

Expression of CNT30104644

Peptides detected in this lncRNA

>peptide 1 (35 aa)
ASSLIIYDDIDRASFFDPFIDKVFGGSLPFESTVE*

>peptide 2 (73 aa)
MLKERGSGGPSKRSEGVMGNLSLYVAREPPSTSLATVLALKDRSFTCGSFASRTRSLATPLTHELESDSFTAD*

Sequence

>CNT30104644
GGCTTCTTCCCTTATTATATACGATGACATAGATAGAGCCTCCTTCTTTGATCCATTCATTGATAAAGTCTTCGGGGGCAGTTTACCTTTTGAATCGACA
GTAGAGTAGGTTTGCTCTTGCTTTCTCAATCTTTCCCTATGTAGTAGATCCGGCTTTATTCGGCTAAAAAGAGGCCGTCGTATCTGCTCGCCCCCTTCTT
CATTCATCCAATTAGGTCAGAATGGATCCAGGGAACCCGGCTCGGGAGCTGCCCTGAGAAAAACACAGTAAGATAGTCCAATCTATGAAATATAGCATTT
TCTCTCCTAAGTACCTAAGCAGTAGTAGAAGGCTTAGTATGTGACTTGATCCAATAGAGTCAGAACACACTGTAGATCCAGATTCCACACCTTGCTGTGG
ACTAGGGAGAGAGCAGCTCTACGAAGCTGGGCGTTCTGTGTGATTATGGAGGAACTGTAGTACTCGCCCCAAAATGCAAGCCGGGATAGATGCTTAAAGA
AAGGGGGAGCGGTGGGCCTTCAAAAAGGAGCGAGGGAGTGATGGGCAACCTTAGTCTATATGTTGCTCGTGAGCCCCCAAGTACCAGTCTCGCAACAGTA
CTGGCGTTAAAGGATCGGTCCTTCACTTGCGGGTCGTTCGCGAGTCGAACTCGCTCTCTTGCCACGCCTTTGACTCACGAACTCGAGTCGGACTCATTCA
CTGCTGACTGATGATCGTTCGTTCTTCACTCTCTTGCTATTACCCGCAAGGAGCACAGCAACCGACGGTGCATATTAGCATATAGAAAAAAAAAGAAGCG
AAGCGTAGCGATTCGTACTACCGGAAAAGTGTCGCTAACCGCTAGGCAATAGAGTCAGCTTACGGGGTGG