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Detailed information on CNT30104505


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30370689Oryza rufipogonOryza glumipatula7.424.5290.13152forward
CNT30108574Oryza rufipogonOryza longistaminata25.0458.4193.77514forward

Expression of CNT30104505

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MPQKVFLYMANLINAFNTFIIRRRFKEKRLKNSVLSRQFH*

>peptide 2 (56 aa)
MKAIIGFHFWIKDMYEDYRYLASVLMPSETIRSYHVKIFNNCTWPFIDLFVFSSHL*

>peptide 3 (37 aa)
MPSILLSLEGVLKKNASKTLCFQGNFISALENLLFQT*

Sequence

>CNT30104505
AAAAAAAACTTGCACGAAAGTTAAAGCTAATCAGCGGCTGTGATTAGAAGCGAGATTAGCACTTAATTATCATTAGCGAGGGGTAATTTCGTCCAAAGAT
TTTCGAGCCCATATCCAGCCCAGTCCATCTGAAGCGATCCCCCCCCCCCACGGCGCCGCGCCGCCTCCACTCCCTCCTCCCCTCGCCTCGCCGCCGCTGC
TCCGCTCAACGCCGCCTTGCCGCCCCGGCGCTCCGCTCTCTTCTTCCCCTAGCCCTTAAAGCGCGCACTGCAGCCGCGGGTCGAACCGGCCCAGCCGCGC
CTCCAGCTCCGCGAGCGGTCGATCCACGCCTCCAGCTCCGTCGTCGCCGCGGGCATCCTCCGCGCCGTCGTCGCCGGGGCCGTCCTCCGCGCCGTCGTCG
CCGCGGCCTCCTCCGCACGGTCGTCTCCGGGGACCGCCTCCACGCCGTCGTCGCCGGGGACCGCCCCCACGCCGTCGTCGCCGTGGACCGCAAGCCGTCG
TCGCCGGGGCCCTCCTCCGCACCATCGTCGCCGGGGACCGCCTCCACGCCGTCGTCGCCGCGGTCCTCCGTGCTGTCGTCGCTCGATTTGGGAGGACATT
ACAGGATGTATGTCATTTAAAGGCATTTTGTGGAGGGCATTTCTTTAAAACTGCCTCAAATCATCTCTTTCAAAGGCAATTTTCATAAAATGCCACAAAA
AGTATTTCTATACATGGCAAATTTAATTAATGCCTTCAATACTTTTATCATTAGAAGGCGTTTTAAAGAAAAACGCCTCAAAAACTCTGTGCTTTCAAGG
CAATTTCATTAGCGCCTTAGAAAATCTCCTATTTCAGACGTAATCACGGAACGCCATAAATTTTATATTATTTGGGGGCATTTTGCAAAATCGCCAGGGT
AACAGATAGAAGGCACTTTTGAGAGAAATGCCTCCTAATCTATACCATATATGCAAAAAGAATCCTGAAAGAATTTAAGGTATAAAAATTAGTCCTTCCA
CCACACGTATGCTACCTTATCAGATCCGAATCAGAATAGATCGATCAGATCAGATCGAAAAAAAAAAATCTCACGCGGCTAGCGAGCGCGCGTGATCGAC
TCCCGGCCGCCGCCCGGTGACTCGCCGCCGGCGACCGCCCGGCACCCCGCGCGCCCGCCCATCGCCCGTCGCGCCATGCCGCCGTCGACGGTCGAACGTC
GCCCATTGCGGCGTCGCCCATCTCCGCATCGGCGCATCGCGCCGTAGCGCCGCCCGTTGACCTAGCTCATAGGGAGATTCGCCGCCGGTGAGCGCCCTGC
GTCCCGCCCGCCTGCTGCCCATCGCGGTGCCGCCATCGACGCTCGACCGTCACCCGTTGCGCCGCCTCGCTGCCTCCACCCTCCAGCCCACGGCCTCACG
CGCCCCGAGCCCACGACGCCGCCGCCCAGAGGTCCAGCTTCCACCTACAGACGAAGCCACGCGTGAATTGAGTTGAGCTGCTATCTGTCGGACTGTCACA
AGTGCAAATTAACTTCGATTGATTGATCATGGATAAAGGGTGGATGAAAGGAGAACAATACATGATCTAACATGCAAGGATAACATAGGACATGAAGATG
TACATTCTAGGACAAGTACTCTTGGAAAAGCCAGCGCTGGTTCCTTAAGTGCTATCAAGTTCACTAATAGCCAAGTGCTAACAACTTCACGGTTCTAGCT
TATGAAAGCAATTATTGGATTTCATTTTTGGATTAAAGACATGTACGAAGATTATCGTTATCTGGCAAGTGTTCTGATGCCATCAGAAACAATTAGAAGC
TATCACGTCAAGATATTCAACAACTGCACATGGCCCTTTATTGATTTGTTTGTCTTTTCCTCTCACTTGTAGCCAGTATATAACTTCAGTGTAACAGAAT
GTTATTTTTTTAGTTGTAAACTGTGATGTGAGAAATAGTTGGAAAGATATCTAAAAAAGATAGCAAATTGCAAATTTTTGGTGTTGAATGAGCACTAATA
TTGGTTTGATTGTACCAATATATCAGTATGTAATTGGATGATTCATTGGCCAC