Detailed information on CNT30104408


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675027Oryza rufipogonSetaria viridis61.1932.0195.64298forward
CNT30603630Oryza rufipogonOryza punctata21.778.3100106forward

Expression of CNT30104408

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MALLCIGRTKPIANNKLFPAPSTLINSHPAKPQLPAHCI*

>peptide 2 (69 aa)
MESSHLYINYAFLASVKNKEMQRKNRTITELFLSPNKQRIERTSAKALARASVFLLEKMIQSDFIGILD*

>peptide 3 (47 aa)
WNHHIYILITHFSLPLKTRKCNEKIGRLRNFFCPQTSNGLSALARKR*

Sequence

>CNT30104408
CATGGAATCATCACATCTATATATTAATTACGCATTTCTCGCTTCCGTTAAAAACAAGGAAATGCAACGAAAAAATAGGACGATTACGGAACTTTTTCTG
TCCCCAAACAAGCAACGGATTGAGCGCACTAGCGCGAAAGCGTTAGCACGCGCATCCGTTTTCTTGCTCGAAAAAATGATTCAATCTGACTTTATCGGTA
TTCTGGATTGAGTAAAAAAGGGATATATGAAGTTCAAGGCCTTGCCAAAACCGTCATGGCCCTATTATGTATAGGCCGTACTAAGCCAATAGCGAATAAC
AAACTCTTTCCTGCTCCCTCGACCCTAATTAACTCCCATCCTGCCAAGCCTCAGCTGCCAGCGCATTGTATCTAAGCACACTGCGGCAAATTGATACAAG
TAGCTAAAGATCTCGCATCCGACATCCCCGGCCGAACGGTTAGGCAACACTAGGGCGCCTGGGTCCAAATTCCGTTTACCAAACAAG