Detailed information on CNT30104377


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMEST004927, E-value = 7e-17

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30347837Oryza rufipogonEragrostis tef59.3398.9696.85763forward
CNT30596724Oryza rufipogonOryza meridionalis43.7823.2798.76563forward
CNT30497700Oryza rufipogonDigitaria exilis25.8960.8897.6333forward

Expression of CNT30104377

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MARAPPEGGLLRLPPKLRRKGPKPIPGNSKAS*

>peptide 2 (48 aa)
MREILASNCEAPILDWKGHQRPLPSLSIYPRDGRAELFFGFFIFSSKS*

>peptide 3 (56 aa)
MLSTVILSALGYPAFTVGTITGTLEVRPSRSSRTRERSSQCSNAHTGYGPNCLTTF*

>peptide 4 (63 aa)
MSVWPEETFARLRYLLGGLRPIETVYLRLSLGPRETFARLRYLLGGLRPIETVYLRLSLGPRV*

>peptide 5 (37 aa)
MKIDGKCLIDLIRSCRNKVQIVRSLGCLSCIHHCTST*

>peptide 6 (30 aa)
MDRTVSRRSEPSSRTALMGEQPNPWNHLQL*

>peptide 7 (35 aa)
MLLSFHPRMGGEPVAVSAVLPEALGKSEERALILG*

Sequence

>CNT30104377
CGAACCATGAACGAGGAAAGGCATGAGAGAAATATTGGCTAGTAATTGTGAAGCCCCAATTCTTGACTGGAAGGGACACCAAAGGCCTCTGCCCTCCCTC
TCTATCTATCCAAGAGATGGAAGGGCCGAGCTTTTTTTTGGTTTTTTCATCTTTTCATCAAAGAGTTGAACAATGAAGATAGATGGCAAGTGCCTGATCG
ATTTGATCAGGTCGTGTAGGAACAAGGTTCAAATCGTTCGTTCGTTAGGATGCCTTAGCTGCATACATCACTGCACTTCCACTTGACACCTATTTAAACG
GCTCGTCTTGCCGCTACCTTATCCTATTTCCATGCTTCTGTCGTTCCATCCCCGTATGGGTGGAGAACCCGTCGCTGTCTCGGCTGTGCTACCGGAGGCT
CTAGGGAAGTCGGAGGAGAGAGCACTCATCTTGGGGTAGGCTTACTACTTATATGCTTTCAACAGTTATCCTCTCCGCACTTGGCTACCCAGCGTTTACC
GTAGGCACGATAACTGGTACACTAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGAC
CGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACCCTTGGAACCACCTACAGCTCTAGGTGGCGAAGAGCC
GACATCGAGGTGCCAAACCTTCCCGTCGATGTGGACTCTTGGGGAAGATCAGCATGTTATCCCTAGAGTAACTTTTATCCGTTGAGCGATGGCCCTTCCA
CTCGGCACCGTCTGATCACTAAGGCCGACTTTCATCTCTGCTCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGACCAATGTC
CGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTACGCCCCATAGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGCGGGAA
ACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTACGCCCCATAGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGCGGGTCTGACACAAGGTTAGAA
TCCGAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCGGAAGGGGGCCTTCTTCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCCAAAGC
CAATCCCAGGGAACAGTAAAGCTTCATAGGGTCTTTCTGTCTAGGTGCAGGTAGTCCACATCTTCACAGACATGTCTATTTCACCG