CANTATAdb - search

Detailed information on CNT30104202

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001566, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30690705	Oryza rufipogon	Oryza sativa	23.37	4.48	82.8	186	forward

Expression of CNT30104202

Peptides detected in this lncRNA

>peptide 1 (37 aa)
CMYICLRYVSKPCNLYILALRSTIQCVQYLQYIYLFL*

>peptide 2 (58 aa)
MPCSSSCCPHNSNMPTLYFISTSINRHRSRCGSHRSPRRSVAAGLEQSSTPHVAGCNL*

>peptide 3 (39 aa)
MQVISEGKYTRHATKCISDQLYARTRIAGPTCQSKSTEF*

>peptide 4 (29 aa)
MVLISRRQPPVYVFLCCRHALPRGLIVIS*

>peptide 5 (29 aa)
MRQNVSPTNYTQEQGLPGPHVSQNRLNFS*

Sequence

>CNT30104202
TGTATGTATATATGTCTGAGATATGTATCCAAGCCATGTAATCTATATATATTAGCCCTCCGAAGCACGATACAATGTGTCCAATATCTTCAATACATCT
ATCTCTTCTTATAATATTCAACATGGCATCAGAGTAGGCGACCTATGCCAGCCACTGCTTAGGCTTCCGCCGTCATCGCCCTTGGGATGGTTCTGATCTC
TCGGAGGCAACCACCCGTTTATGTTTTTCTTTGTTGCCGTCATGCCTTACCTAGGGGATTGATCGTGATCTCCTAGGCATGCCTTGTTCTTCGTCATGTT
GTCCACACAACAGCAACATGCCAACATTGTACTTCATCAGCACCAGCATCAATCGTCATCGATCTAGATGTGGTAGTCATCGTTCTCCTCGCCGATCTGT
TGCAGCTGGCCTTGAACAATCGTCAACACCCCATGTAGCAGGTTGTAACTTGTAAGTGGATATTACCTAGTTGAACTCACCAGACTATGGCAAAGTCCTT
AGACTTAGTAGTTGTTGACAGTGGTTAAGTGCAAACTTCCACCGTCAACTTCTGCATAAAAGAATATAAAATATAATATCAAACTTAGTGATAGTGTTTT
TTTACTAACCTTTTCCACTAGTCTTGGTAAATATTAGTATGCAGGTGATTTCTGAAGGAAAATACACTCGCCATGCGACAAAATGTATCTCCGACCAATT
ATACGCAAGAACAAGGATTGCCGGGCCCACATGTCAGTCAAAATCGACTGAATTTTAGCTAATCCACTACTAACCGGCATCAGGGCCCACCAGTCA