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Detailed information on CNT30104117


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001233, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30604857Oryza rufipogonOryza punctata74.0280.3292.93396reverse complement

Expression of CNT30104117

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MKCTIKFPHLYCQAHILLNTAIQKIRDSKSDTTTISSPLLAWR*

>peptide 2 (32 aa)
MSQDYALHLAICAALIDMEHLLPHPTEEQSHAC

Sequence

>CNT30104117
TATGATGGAAATTTGTCACAGCATACAGACTGGTGGTTAAAACAAGCAAGGATGAAATCTAATTTATCAGACTAGTTATCAAATCAATTAAACAACTAAA
CATGTACAATTGTACCTTACAAGGTCTCTAAACATGAGGAGCCAAAATACACAAAAACGAAATCGCTTAAGCTTGAACGAATTTCACTGAAGTAGCAAAA
TGAAATGCACAATAAAATTCCCTCACCTTTATTGCCAAGCCCATATCCTTTTGAATACAGCAATCCAAAAAATAAGGGATTCCAAATCTGACACAACAAC
CATTTCTTCCCCATTGCTTGCTTGGAGATGAAAAGAGCTCCCCACTATGAACATGGCAATTATGAACATCAACATGAGCCATTGCAGAACAAATAACCCT
CCAAACAAAACTGTTAAAAGAATGTGTTAAGTCTCATGAGCCAAGACTATGCCCTACATCTAGCAATTTGTGCCGCACTCATTGATATGGAACACTTGTT
GCCTCATCCGACCGAAGAGCAATCCCATGCTTGCC