Detailed information on CNT30103723


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004391, E-value = 3e-152

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696645Oryza rufipogonOryza sativa30.9467.3394.81443reverse complement
CNT30363421Oryza rufipogonSorghum bicolor9.520.1585.29136forward
CNT30370347Oryza rufipogonOryza glumipatula27.4453.5486.77393forward
CNT30117659Oryza rufipogonOryza nivara32.1910.9288.94461forward

Expression of CNT30103723

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MIKEVDWGPNQDLLQVHFHLTTSLLIHRRQEIKFYTFWIRILKFYTHFGFGFRPPDIINFKRTEQLI*

>peptide 2 (33 aa)
MFGALSTSTGMSGVVVLAPAPPPRHRHRAIRSS*

>peptide 3 (40 aa)
MVLDRRQNSYRAVGNLQNKPRISSSPNLICVLGLVIVSWA*

>peptide 4 (93 aa)
RRRQLLLEVVEEHRVEERVKGGNGGHDRGSLVADDLDAADLDVGEGNEVEVGVNVRRLVDVDGDERGGGARAGAAAASSSSSHTKLLRSPSIK*

>peptide 5 (33 aa)
MQFSCNLSCTCLCSSIRMQGLAFSARATGFRHG*

>peptide 6 (33 aa)
MESTFKWFWTDVKILIELSGICKTSHVSHPVRI*

Sequence

>CNT30103723
GCCGGCGCCGGCAGCTGCTTCTTGAGGTGGTGGAAGAGCACCGGGTTGAGGAACGTGTAAAGGGTGGAAACGGTGGTCATGATCGCGGCAGCCTTGTCGC
TGACGACCTCGACGCTGCCGACCTTGATGTCGGTGAAGGCAACGAAGTAGAGGTTGGGGTCAATGTTCGGCGCCTTGTCGACGTCGACGGGGATGAGCGG
GGTGGTGGTGCTCGCGCCGGCGCCGCCGCCGCGTCATCGTCATCGAGCCATACGAAGCTCCTGAGATCGCCGTCGATTAAGTAGGCGAACCTCCGGAACG
ACGCGGCAAGGACGCTGCGCCTGCCGAGGCCGACAACGGCGGCGTCCTTGCCGGAGGAGGAGGCGGAGGAGCACATGTACACCACCGTGTCTATTCCCCT
GCTTGATCAGTCTCTCTTCTCACCGACACTCGAAGACTATTGACGATTAAGTTTTAAGACTTTGATCACCATGCTTAGGCAGCTTAACTTAAAACATTAA
TTGAATATATATATATTGGTCAGGGTTTTCTTCAACATGGTTTTAAAGATGGACTAGTGGGTCACTTAATATACGTGGAAAATTGATGAGGACCCAACTA
GCTCGGATATAACCATGACTACCTTATGTATTGATCAACCAAAGGTGCATATGTTCTATATTTACTTGTTATATATTTGAATAAACATTGTTATACAATG
AGTTTGACGTGTTTTCGTTTGTAGATGTACTTGATTGTGCGAAAGAAAAGAGAGCGAGCGTAAAGAATGCATGGATGATTAAAGAAGTTGATTGGGGACC
AAACCAAGACCTTCTCCAAGTCCACTTCCATCTCACCACGTCACTTTTGATCCATAGAAGACAAGAGATCAAGTTTTACACATTTTGGATTCGGATTCTC
AAGTTTTACACACATTTTGGATTCGGATTCAGGCCTCCAGACATCATCAACTTCAAACGGACCGAGCAGCTAATCTAGAAGGAATTTCGGGGCCTAAGAG
TACTTGTTGGAAAGCTTATGGAGTCTACTTTCAAATGGTTTTGGACCGACGTCAAAATTCTTATCGAGCTGTCGGGAATCTGCAAAACAAGCCACGTATC
TCATCCAGTCCGAATTTGATTTGCGTTTTGGGCCTTGTAATTGTGTCGTGGGCTTAGCCCACGGGGGTATGCACCCTAGGGCAACCCTAAAACATCCCTA
ATCATATTTATTCAGTAGCCGTCATCGTTTAAAGTTGGGTTTTGCTTAGATTAATCTGTCAAGAACCGTTTCACCGCCAGATCGGTTTGTGGAACACCAA
ATTTGAGTGCTTAATCATTCATATGCAATTTAGTTGCAATCTATCTTGTACTTGCTTGTGTTCTTCGATTCGCATGCAGGGATTAGCCTTCTCGGCGAGG
GCAACCGGGTTTCGGCACGGTTGATAACCAGA