CANTATAdb - search

Detailed information on CNT30103385

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30674956	Oryza rufipogon	Setaria viridis	12.72	24.38	96.15	78	forward
CNT30520559	Oryza rufipogon	Setaria italica	41.44	18.7	90.55	254	forward
CNT30452884	Oryza rufipogon	Saccharum spontaneum	41.44	41.64	90.16	254	forward
CNT30580658	Oryza rufipogon	Echinochloa crusgalli	41.44	28.67	91.34	254	forward

Expression of CNT30103385

Peptides detected in this lncRNA

>peptide 1 (49 aa)
CIHRRRSIADSGRLRWRGGALSEVGREPQGPRSTEPEGPRHRHSHSHQL*

Sequence

>CNT30103385
TTTGCATCCACAGGAGGCGCTCCATAGCTGACAGCGGCAGGTTGAGGTGGCGCGGCGGAGCCCTAAGCGAGGTGGGGAGAGAGCCGCAGGGGCCGCGGAG
TACGGAGCCGGAGGGGCCCCGCCATAGGCATAGCCATAGCCACCAGTTGTAGTGTTACCGTAGGCGTAGGGGTCACGGGACGACTGCTGGTGGTAGGGAG
CAGGGTACGCCGGCGAGGGGTCGTAGTAGCGCTTGGGCTCGCGGACGGCGACGCGGACTTCGAGGCGTCCATGGGGGCGGCCGGAGGGGCGCTTGAGGCG
GAGGGAGCGGGAGGCGCGCGGAGCCGACGAGGGGCTTGACGCCGTCGGTGGCGTTGGCGTGGACGACGTCGAGGTAGAGGACGGCGTCGTCGAGGCGGGT
GGAGGGCGGGAGAGGGACGGTGAGCTTGTCATCCCAGGTGGGGTTGTCGGCGTTGTCGAGGTCGACGCGGGTGGAGCACTTGGCGCCGTCGTCGATCCAC
ACGACGGCGTAGGGCTTGAGGTCGCCGTTGCGCCAGTTGACGTTCTTGAGGTCGCGCGCCGAGGCCACCGTCACCTCCACCTCGTAGCGCGACGCTGCCA
TGGCTAGTGCTTT