Detailed information on CNT30103022


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596684Oryza rufipogonOryza meridionalis10065.7598.53476forward

Expression of CNT30103022

Peptides detected in this lncRNA

>peptide 1 (86 aa)
SPSPSVVHPDFSIPSPSVLHPVAIAPPSIPTSDRCRRRTLALTAFRHRIARRPVSTAQPSGRRQSLVIRSHHSRGVVKPSGLPWRS*

>peptide 2 (64 aa)
MQPLPPSPPLARKRNLSTMPLDCKFQYGCFLLYPSDDMDFLKPQRMGAFQYIPIVKLLHNASLLF

>peptide 3 (41 aa)
LHRRPLSIRISRSHHRPFSIRSPSRRRRFPPQIDAAGAPSR*

>peptide 4 (32 aa)
SIAVRCPSGFLDPITVRSPSGRHRAAVDSHLR*

>peptide 5 (38 aa)
MPPAHPRADRVPPSDRSPSCLHRAAIRSSSITRHPISS*

Sequence

>CNT30103022
TCTCCATCGCCGTCCGTTGTCCATCCGGATTTCTCGATCCCATCACCGTCCGTTCTCCATCCGGTCGCCATCGCGCCGCCGTCGATTCCCACCTCAGATA
GATGCCGCCGGCGCACCCTCGCGCTGACCGCGTTCCGCCATCGGATCGCTCGCCGTCCTGTCTCCACCGCGCAGCCATCAGGTCGTCGTCAATCACTCGT
CATCCGATCTCATCATAGCAGGGGAGTCGTTAAACCATCAGGCTTGCCTTGGCGATCCTGACCTGGAGCGAGGAAGACTGATGCAGCCATTGCCGCCATC
ACCACCTTTGGCACGCAAACGGAACCTATCCACCATGCCCCTTGACTGCAAATTTCAGTATGGATGTTTCTTACTATATCCGTCTGATGACATGGATTTC
TTGAAACCCCAAAGAATGGGTGCCTTTCAGTATATTCCGATTGTCAAACTTTTACATAATGCAAGTTTGTTATTTC