Detailed information on CNT30101847


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693375Oryza rufipogonOryza sativa64.6328.9699.21254forward
CNT30111572Oryza rufipogonOryza longistaminata22.1434.6694.2587forward

Expression of CNT30101847

Peptides detected in this lncRNA

>peptide 1 (49 aa)
LPPLPCARIAAFPRQAGEATGRRASPLDWDRAAASPLCLCRPRQAAAVS*

>peptide 2 (47 aa)
SPHSRVLASPPSRARPERRQAAAPRRWIGTGRPPRRFASVDRVRPPP*

>peptide 3 (81 aa)
SPPTPVCSHRRLPAPGRRGDRPPRLAVGLGPGGRLAALPLSTASGRRRELAGSCRRAAASGEGTGRPPRRFASLDRVRPPP*

Sequence

>CNT30101847
TCTCCCCCCACTCCCGTGTGCTCGCATCGCCGCCTTCCCGCGCCAGGCCGGAGAGGCGACAGGCCGCCGCGCCTCGCCGTTGGATTGGGACCGGGCGGCC
GCCTCGCCGCTTTGCCTCTGTCGACCGCGTCAGGCCGCCGCCGTGAGCTAGCTGGGAGCTGCCGCCGCGCCGCCGCGAGTGGGGAGGGGACAGGGCGGCC
GCCTCGCCGCTTCGCCTCCCTCGACCGCGTCAGGCCGCCGCCGTGAGCTAGCTGGGAGCCGCCGCCGCGCCAGGGCGGAGAGGCGCCAGACCGCCGCGCC
GCCGCGAGTGGGGAGGGGAGTTGCACGGGCTCGCGGACGACCCCGACGCCGACCCGGTCTTCAAGAACGTCGCGCTCGACATGGACATCCTCT