Detailed information on CNT30101824


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693359Oryza rufipogonOryza sativa82.8999.32100441forward

Expression of CNT30101824

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MDYRRFAAIISNTCPHKIWNKRWCTEATKLPSAASTQQSLTII*

>peptide 2 (36 aa)
MQFKSTVIYCLFTVHVETHRHSQGIIPELESGGTGRK

>peptide 3 (88 aa)
MTASDRSQLIARVPVKTDASLQRMGADGLQTICSNNIKYMPPQNMEQKVVYRGHQVTKCGINTTEFNHNLTVYAVQIDGNLLSLHSSC*

>peptide 4 (71 aa)
AVFLTQSKYSSLYQNRFESIIYLYQRMNLKSIHPNKPAIDQRTQQSYSQGRNEVERKCKVILNRHIVHDCI*

Sequence

>CNT30101824
GCTGTATTCCTGACGCAAAGTAAATACTCATCGCTTTACCAGAATAGATTTGAATCCATAATCTACCTCTACCAGAGAATGAATCTAAAATCCATCCATC
CAAACAAGCCAGCCATAGATCAACGCACACAGCAAAGCTATAGCCAAGGAAGAAATGAAGTAGAGCGAAAATGCAAGGTGATCCTAAACCGGCACATTGT
ACATGACTGCATCTGACAGGTCACAACTAATTGCTAGAGTTCCAGTTAAAACTGACGCTAGCCTACAAAGGATGGGTGCAGATGGATTACAGACGATTTG
CAGCAATAATATCAAATACATGCCCCCACAAAATATGGAACAAAAGGTGGTGTACAGAGGCCACCAAGTTACCAAGTGCGGCATCAACACAACAGAGTTT
AACCATAATTTAACTGTCTATGCAGTTCAAATCGACGGTAATTTACTGTCTCTTCACAGTTCATGTTGAAACCCATCGTCATTCTCAGGGAATAATACCA
GAGCTCGAATCTGGGGGTACAGGCAGGAAGTT