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Detailed information on CNT30101698


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000848, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694558Oryza rufipogonOryza sativa22.8367.9593.96265forward
CNT30369837Oryza rufipogonOryza glumipatula37.1216.3692.58431forward
CNT30578555Oryza rufipogonOryza barthii8.2743.0596.8896forward
CNT30116961Oryza rufipogonOryza nivara25.6710098.32298forward

Expression of CNT30101698

Peptides detected in this lncRNA

>peptide 1 (35 aa)
PVGEDVDAQQQRHNRPAVQAKTPVGGGEGKPVVMF*

>peptide 2 (79 aa)
MHMSDMSSSLMEQSFTNQNLLLGYFCNYQEQKINLSHLYAFDLFRIILSTLRYSVHPTSPRVLGIGPKATTHWQTKRKA*

>peptide 3 (58 aa)
MAEVANVGTKSSINNNEDTSRRRRRRSTVKAKMPTNGGIIGQPCKRKHQSTATKVSQR*

Sequence

>CNT30101698
GCCGGTCGGTGAAGACGTAGACGCCCAACAACAGCGGCATAATAGGCCAGCCGTGCAGGCGAAGACACCAGTCGGCGGCGGCGAAGGCAAGCCGGTGGTG
ATGTTCTGACTGATCCATTCCTGGAGCGTAAGAGATAAGATTAAAGCCATGAATCCCTTTTGTGCATATCTGGATCTGGATCCTGCAGAACAAATATATA
GGATGAGTAGTATCTAATGTAAATATAATACTCGAGAAAAATTCAAGTATTTTAAAATGTTTATAAATATGTATTTCTCCTCTTGTCAATTTTGATTTCC
CCGAGCAGATGATTCATTACGTTTAAACGCTCTGTCCGACTAGTCATAGCCCCCAAGCACCGGGAGTCGGCCTAGGCACTTCCTAGACATGCATATGAGT
GACATGAGTTCGTCATTAATGGAACAAAGTTTCACGAATCAGAATTTACTACTCGGGTACTTTTGCAATTATCAAGAGCAGAAAATAAATTTATCTCATC
TCTATGCTTTTGATTTATTCCGAATAATACTTAGCACCTTGCGTTACTCGGTCCATCCAACGAGCCCCCGGGTGCTAGGAATCGGCCCAAAGGCAACCAC
CCATTGGCAAACCAAACGGAAAGCATAGGAAGATAGAACTCCATAACTCGATAAGTACTTTTGTACTCAGATTATGTCGCAAGCAATCAAGATAAATATT
AGAAAAAATATGATATAACATCTGTAGCCCCCGACTCACTACTCAATGGAAGACCAATTGGTGTAGTGAGGCAGAGGAAAAGGAAAAATATCATATAAAG
AATAAAATAAATGATGACTTAGCTTTGTAATATTCCCCTTGGTGATGGCAGAAGTGGCCAATGTGGGAACAAAGTCGTCCATCAATAACAATGAAGACAC
CAGTCGGCGGCGACGAAGGCGGTCGACGGTGAAAGCGAAGATGCCCACTAATGGCGGCATAATAGGTCAGCCGTGTAAGCGGAAACACCAGTCGACGGCA
ACGAAGGTGAGCCAACGGTGAGGATGTAGACATCCAACAATGGCGGCATAATAGGCCAGCCGTGTAGGCGGAGGCACCACACGGCGGCGACGGAGGCAGG
CCGGCGGTGAAGTCGTAGACGCCCAACAGCGGCGGCATAATAGGCCAGCCGTGTAGGCGGA