Detailed information on CNT30101687


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693580Oryza rufipogonOryza sativa25.8510.9100159forward
CNT30676402Oryza rufipogonSetaria viridis21.4654.189.39132forward
CNT30173524Oryza rufipogonTrifolium pratense48.1331.3981.42296forward
CNT3022471Oryza rufipogonPopulus trichocarpa35.1223.7481.48216forward

Expression of CNT30101687

Peptides detected in this lncRNA

>peptide 1 (86 aa)
MDNTISCHDFGTTQLHVGAVHFPPKKLVQCRIACKNNRLVKTLYAPDAKSSKISSYSNSSSSHKCKCKCLLICPRISTGNSSTSMYI

>peptide 2 (51 aa)
TVEVQQCLRSLGCRIWKPHLSSTRNRLLTGIKLTRVSRDSLHHAVFIKHTT*

>peptide 3 (52 aa)
MLSLSNIPPNHFPWLSSTPRIAARGSHEFSGMYATGLSGGSNGVVTGSGPPM*

>peptide 4 (33 aa)
MPAQSWLQNLETTLVQHEEQIAHGNQADQGQQG*

>peptide 5 (32 aa)
RLKSSNACAVLVAESGNHTCPARGTDCSRESS*

Sequence

>CNT30101687
CACGGTTGAAGTCCAGCAATGCCTGCGCAGTCTTGGTTGCAGAATCTGGAAACCACACTTGTCCAGCACGAGGAACAGATTGCTCACGGGAATCAAGCTG
ACCAGGGTCAGCAGGGATAGTTTGCATCATGCTGTCTTTATCAAACATACCACCTAACCATTTCCCTTGGCTGTCATCAACACCACGGATAGCCGCTCGA
GGATCACACGAGTTCTCAGGAATGTATGCAACAGGTCTGTCCGGTGGGTCCAACGGTGTTGTTACTGGAAGTGGTCCACCAATGTAGGCAGGAACATAAC
TGAGCCACCTCAATATATTAGAAACGCCTTCAAGGTCATCTGAAACAGTAAGATGGACAACACCATTAGTTGCCATGATTTTGGGACCACCCAACTGCAT
GTGGGAGCTGTACACTTCCCGCCCAAGAAGCTTGTTCAGTGCAGAATAGCCTGTAAGAATAATAGGCTGGTCAAGACGCTGTATGCACCGGATGCCAAGT
CGAGCAAGATAAGCTCCTATTCCAACAGTTCTTCCAGTCACAAATGTAAGTGTAAATGTCTCCTTATATGCCCTAGAATAAGCACTGGCAATAGCAGCAC
TTCCATGTATATTCT