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Detailed information on CNT30101647


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 1e-45

BLAST vs NONCODE:
NONGMAT001327, E-value = 3e-52

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671259Oryza rufipogonSetaria viridis25.5458.1997.48238forward
CNT30523218Oryza rufipogonSetaria italica32.355.1395.35301forward
CNT30317753Oryza rufipogonCorylus avellana28.8638.6582.16269forward
CNT30546681Oryza rufipogonIpomoea triloba25.9751.4983.06242forward
CNT30703567Oryza rufipogonQuercus lobata19.5336.0484.07182forward
CNT30375418Oryza rufipogonArabidopsis thaliana9.4437.2986.3688forward
CNT30617135Oryza rufipogonSesamum indicum31.1228.9184.48290forward
CNT3069058Oryza rufipogonQuercus suber24.0325.680.8224forward
CNT3042757Oryza rufipogonPrunus dulcis28.9744.5582.96270forward
CNT30178072Oryza rufipogonSecale cereale32.7356.2795.08305forward
CNT30283432Oryza rufipogonTriticum aestivum32.8358.1795.75306forward
CNT30221015Oryza rufipogonHordeum vulgare24.4643.2696.49228forward
CNT30386576Oryza rufipogonTriticum turgidum32.1951.1996300forward
CNT3086297Oryza rufipogonVigna radiata29.9423.9982.8279forward
CNT30437818Oryza rufipogonAegilops tauschii31.7651.2195.95296forward
CNT30244338Oryza rufipogonAvena sativa32.1954.0594.67300forward
CNT30664208Oryza rufipogonTriticum dicoccoides31.5558.4596.26294forward
CNT3059678Oryza rufipogonArabidopsis lyrata12.7724.7484.87119forward
CNT3082467Oryza rufipogonBrassica juncea28.5437.181.2266forward
CNT30471244Oryza rufipogonSaccharum spontaneum31.8731.0396.63297forward
CNT30135649Oryza rufipogonLolium perenne31.5557.3194.56294forward
CNT30679384Oryza rufipogonTriticum urartu32.8350.595.42306forward
CNT30720165Oryza rufipogonTriticum spelta16.4232.6292.16153forward
CNT30348363Oryza rufipogonEragrostis tef31.7653.1496.96296forward
CNT30619612Oryza rufipogonCajanus cajan13.7330.5581.25128forward
CNT30357929Oryza rufipogonLactuca sativa25.6453.3581.17239forward
CNT30370989Oryza rufipogonOryza glumipatula32.448.3295.36302forward
CNT30645456Oryza rufipogonCannabis sativa20.8225.2987.11194forward
CNT3024855Oryza rufipogonPopulus trichocarpa25.9741.2379.75242forward
CNT30325970Oryza rufipogonAsparagus officinalis23.0731.1684.65215forward
CNT30331117Oryza rufipogonDioscorea rotundata31.1230.6278.97290forward
CNT30147953Oryza rufipogonBrachypodium distachyon31.8734.1892.59297forward
CNT30496126Oryza rufipogonDigitaria exilis32.444.4194.7302forward

Expression of CNT30101647

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MYQPNMQCRFQPETYIELSLSSPNRTNQNKISSQNGQTQIAHQQEDRSTTLALKHVSIQIPVANIICFTIS*

Sequence

>CNT30101647
TGCTGAGGGAATACAAATGCAACTGCAGTAACAGAAATAACTAAAGCACAGATGAATTTGGCTACTGCAGTAACAGAAATATAAAGTCCAAAATATTAAA
CGAATTGGATCTATCGTCAAATTAAAGCAACTCAGACACCGCTTGATATTCTGCAAATCCGCTGTTCTTAGTATTGGTCAGCGATGGTCAAATCAATATA
TAGCACATTTCAAGATGTATCAGCCCAATATGCAATGTAGATTTCAACCAGAAACCTATATCGAACTCAGCCTAAGTTCACCAAATCGCACTAACCAAAA
CAAAATTTCATCCCAAAACGGACAAACACAAATTGCACATCAACAAGAGGACAGATCCACAACATTGGCTCTGAAACATGTTTCAATTCAAATCCCAGTT
GCAAACATCATTTGCTTCACAATTTCATGATTCAGGTAAACACTAGAAAAACTAAACAGCGAACTGAACAAGGTGGATTCCACGGCTTTCCATCAAACTT
TTTTTCTTGACCGCAAGACTTGTGGGCACGGCCAGACGACATGGGAGAGATGGCGGAGGGAGGGTGCGGCCCTGGCGCTTGAGCGCGTAGACGACGTCCA
TGGCGGTGACGGTCTTGCGGCGGGCGTGCTCGGTGTAGGTGACGGCGTCGCGGATGACGTTCTCGAGGAAGATCTTGAGCACGCCGCGGGTCTCCTCGTA
GATCAGCCCGGAGATGCGCTTCACGCCGCCCCTCCTTGCCAGCCTCCGGATCGCCGGCTTGGTGATCCCCTGGATGTTGTCGCGGAGCACCTTCCGGTGA
CGCTTGGCGCCGCCCTTGCCGAGCCCCTTGCCTCCCTTGCCGCGCCCCGACATGGCCGCCGACGACGACTATTCCGGTGGCTCGACGCACGAGAGAGAGA
GAAAAGCGAGTGGAATTGGAGAAGAGGTGGTG