Detailed information on CNT30101572


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01548|PER2_HORVU, E-value = 4e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693017Oryza rufipogonOryza sativa48.0156.82100758forward
CNT30370179Oryza rufipogonOryza glumipatula16.1573.9199.22255reverse complement

Expression of CNT30101572

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MHGNQTPRADGILLIIITSTKHKHKTITNYSIS*

>peptide 2 (29 aa)
MMMIHLTCSYSVPTEESSSNFTFYEAKPF*

>peptide 3 (44 aa)
MERANWSKKAAWLRAKRTAVRLVCASSMRPWSDLKIPCLAMRSK*

>peptide 4 (39 aa)
METLILGLCCDKDSCDDVALTDDDDTFDMQLLCPDRGIE*

>peptide 5 (48 aa)
MMGLEPSKRSLKLPQWPSPMVCAPDSATRSVLSRFRSLNAWMSVGTSK*

>peptide 6 (46 aa)
MVVGRACGKQSWKKMRTRPAAMPMSRRRASVTCHLTMPSTDGHDVS*

>peptide 7 (60 aa)
MASRVASVVMSAQDTLAPQAECTAARMSSMSFSADGRSVWLGISPSSLWEPVRRTDASHP*

Sequence

>CNT30101572
TGTTTTGTTTTTATCTGATTAAGTGTCGTGCTATGCCGAACGATGGAAACATTAATTTTGGGTTTATGCTGTGACAAAGACAGTTGTGATGATGTAGCAC
TAACTGATGATGATGATACATTTGACATGCAGTTACTCTGTCCCGACCGAGGAATCGAGTAGTAACTTTACTTTTTATGAAGCAAAACCATTCTAACTAA
GCAGAGAATGCATGGAAACCAAACACCACGCGCAGATGGCATCCTCTTAATTATTATTACTAGCACAAAACATAAACATAAAACGATCACTAATTACTCC
ATAAGTTAATTAGGCGTCGGCGGCGAAGCCTTGGTCGTCGTCGGCAGCGTTGAGGAGGTCGGAGGAGCGGCGGTTGGGAGCGGCGCAGTTGTTGCGGATC
TCGCCGGCGTTGCCGGTGAGGACGTCCATCTGGCTCATCTTGACCATGGAGCGTGCGAACTGGTCGAAGAAGGCGGCCTGGTTGAGGGCGAAGCGGACGG
CGGTGCGGTTGGTCTGCGCGTCCTCGATGAGGCCCTGGTCGGACTTGAAGATCCCCTGCTTGGCGATGAGGTCGAAGTAGTACTTGTTGTCGAAGGCGTT
GGGCGTGCGGACGTCCAGCTCCTGCGTGACCGAGTTCACCGGCACGTCCTTGGCGCACTTGGCCTGCAGCTTCTTCACCAGCACAGGGTCCATGATGGGC
TTGGAGCCATCGAAGCGGTCGTTGAAGCTGCCGCAGTGGCCTAGTCCGATGGTGTGCGCGCCGGACAGCGCCACCAGGTCCGTCTTGTCCAGGTTTCGGT
CCTTGAACGCCTGGATGAGCGTGGGCACGTCGAAGTAGGGCCCGCCGGACTGCCATGTAAATGTAATTAAATTAAATATGTTAATTTGTTCAGTTCTTGA
GTAAAAATCCCGACTGTTCATTATTAATTAAGAATTAGACGTACGGCGACGATGGCGTCACGCGTGGCGAGCGTGGTGATGTCGGCGCAGGACACCTTGG
CGCCGCAGGCGGAGTGTACGGCGGCGCGGATGTCCTCGATGAGCTTCAGCGCCGACGGCCGCAGCGTCTGGTTGGGTATCTCACCCAGCTCGCTTTGGGA
ACCCGTCAGGAGGACCGACGCGTCGCACCCCTGAACACTTAATTAATTATGTTAATATACTACTGTAGTTACTAAAACTCGGTATTTAATTTGTTTTTTT
TTTATGTATTGCCATCTGTAAGAAGGAGGCACCATGCATCAACCGAACCGGCAACTACTGGAGTAAAATGGTAGTAGGACGTGCCTGCGGGAAGCAGTCG
TGGAAGAAGATGCGGACGAGGCCGGCGGCGATGCCGATGTCGCGGCGGAGGGCCTCGGTGACGTGCCACCTCACGATGCCCTCCACCGACGGGCACGACG
TGTCATAGAACCCCCAGGAGAGGCCGGCGACGACGGGTTCGCCGGTGGTCACCACGGCCGCGCAACGGGCAGCAAAGAGGCCCGAGATCAGTAGCACAAC
CATACCCAGCTTGGACGCCATTGCTCAACACTCTAGCTAACAAAGATCGATCACTCTCAGCTCGACCTCTGCCTCCTGC