Detailed information on CNT30101479


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01548|PER2_HORVU, E-value = 4e-61

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30179783Oryza rufipogonSecale cereale23.9529.983.2250forward
CNT30290573Oryza rufipogonTriticum aestivum7.1826.4185.3375forward
CNT30221586Oryza rufipogonHordeum vulgare8.8145.186.9692forward
CNT30590929Oryza rufipogonMusa acuminata7.8521.2484.1582forward
CNT30553544Oryza rufipogonOryza glaberrima35.3452.27100369forward
CNT30342803Oryza rufipogonEragrostis tef8.9123.3190.3293forward
CNT30596085Oryza rufipogonOryza meridionalis78.9351.6397.69824forward

Expression of CNT30101479

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MMGLEPSKRSLKLPQWPSPMVCAPDSATRSVLSRFRSLNAWMSVGTSKKGAGRRPTLSLDAGASPSRRPRGTSK*

>peptide 2 (59 aa)
MASRVASVVMSAQDTLAPQAECTAARMSSMSFSADGRSVWLGISPSSLWEPVRRTDASHP

>peptide 3 (44 aa)
MERANWSKKAAWLRAKRTAVRLVCASSMRPWSDLKIPCLAMRSK*

>peptide 4 (33 aa)
MHGNQTPRADGILLIIITSTKHKHKTITNYSIS*

>peptide 5 (29 aa)
MMMIHLTCSYSVPTEESSSNFTFYEAKPF*

Sequence

>CNT30101479
CACTAACTGATGATGATGATACATTTGACATGCAGTTACTCTGTCCCGACCGAGGAATCGAGTAGTAACTTTACTTTTTATGAAGCAAAACCATTCTAAC
TAAGCAGAGAATGCATGGAAACCAAACACCACGCGCAGATGGCATCCTCTTAATTATTATTACTAGCACAAAACATAAACATAAAACGATCACTAATTAC
TCCATAAGTTAATTAGGCGTCGGCGGCGAAGCCTTGGTCGTCGTCGGCAGCGTTGAGGAGGTCGGAGGAGCGGCGGTTGGGAGCGGCGCAGTTGTTGCGG
ATCTCGCCGGCGTTGCCGGTGAGGACGTCCATCTGGCTCATCTTGACCATGGAGCGTGCGAACTGGTCGAAGAAGGCGGCCTGGTTGAGGGCGAAGCGGA
CGGCGGTGCGGTTGGTCTGCGCGTCCTCGATGAGGCCCTGGTCGGACTTGAAGATCCCCTGCTTGGCGATGAGGTCGAAGTAGTACTTGTTGTCGAAGGC
GTTGGGCGTGCGGACGTCCAGCTCCTGCGTGACCGAGTTCACCGGCACGTCCTTGGCGCACTTGGCCTGCAGCTTCTTCACCAGCACAGGGTCCATGATG
GGCTTGGAGCCATCGAAGCGGTCGTTGAAGCTGCCGCAGTGGCCTAGTCCGATGGTGTGCGCGCCGGACAGCGCCACCAGGTCCGTCTTGTCCAGGTTTC
GGTCCTTGAACGCCTGGATGAGCGTGGGCACGTCGAAGAAGGGCGCCGGCAGGAGGCCCACCTTGTCGCTCGACGCCGGTGCCAGCCCGTCGCGCCGCCC
CAGAGGCACGTCGAAGTAGGGCCCGCCGGACTGCCATGTAAATAATTAGACGTACGGCGACGATGGCGTCACGCGTGGCGAGCGTGGTGATGTCGGCGCA
GGACACCTTGGCGCCGCAGGCGGAGTGTACGGCGGCGCGGATGTCCTCGATGAGCTTCAGCGCCGACGGCCGCAGCGTCTGGTTGGGTATCTCACCCAGC
TCGCTTTGGGAACCCGTCAGGAGGACCGACGCGTCGCACCCCTG